Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54860 211 / 1e-63 Major facilitator superfamily protein (.1) AT5G25050 76 / 1e-14 Major facilitator superfamily protein (.1) AT2G33280 72 / 1e-13 Major facilitator superfamily protein (.1) AT1G04570 71 / 4e-13 Major facilitator superfamily protein (.1) AT1G79710 71 / 6e-13 Major facilitator superfamily protein (.1) AT2G32040 70 / 9e-13 Major facilitator superfamily protein (.1) AT1G64890 66 / 1e-11 Major facilitator superfamily protein (.1) AT5G25040 66 / 2e-11 Major facilitator superfamily protein (.1.2.3) AT5G10820 61 / 8e-10 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037809 [exp] 288 / 3e-92 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 79 / 9e-16 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 79 / 1e-15 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 78 / 3e-15 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 77 / 4e-15 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 68 / 6e-12 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10023708 [exp] 65 / 5e-11 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10004407 [exp] 53 / 2e-08 AT2G33280 135 / 7e-39 Major facilitator superfamily protein (.1) Lus10010565 [exp] 56 / 5e-08 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G137300 [exp] 218 / 8e-66 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 211 / 3e-63 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 79 / 8e-16 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 72 / 2e-13 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 71 / 6e-13 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 70 / 1e-12 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 67 / 7e-12 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 63 / 2e-10 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 61 / 6e-10 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 59 / 2e-09 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10017090 pacid=23167494 polypeptide=Lus10017090 locus=Lus10017090.g ID=Lus10017090.BGIv1.0 annot-version=v1.0 ATGATAGAATGGACGAAGCAGATGAAGAGGTCATTCGGGGGTTCATTTCTTTGGCTCGTTTGCTTGATTTACTTCACTCAGACTGATAGCAACTATGATG TAGACGTTGATCTCAGCTTCCCACCTGAAATTCACTGCATCGCTGGATTCAGATCGTTTGTATGGACTGCAGTTTCCTACCAGCTTAAAGACAAGTTGAA ATTATCACCATCAGCCTCTCAGTTCGTTTCTTCATTGGCATTTTTTCCATGGAGCATTAAACCACTATATGGGAACTCAAGCTGGTACCTTATGGTCTTG TTGACAGCACAAAACCTGGGTTCTGCAATGGCAGATGTTGTTGTTGATGCAATGATCGCCGAGGCAGTGAGGTTTGAGAAGGCTTCTTTTGCCGGAGATT TACAGTCGCTTTCTTGGTTTTCAATGGCTTTGGGTGGAATATGTGGAAGCCTATTGGGAGGATTTGCATTATCTAATTTACCAATTGATACCATTTTTCT TCTGTTCTCTGTGTTGCCAGCAATACAACTGTTTTCCTGTTGTTTGGTTGAGGAGAATCCAGTAGTCAGTGAGGTTGTTTCTACATCTGATGACGATGCG AATGGGAGTAGTCATTCAGATGATAGCAGTTGCTTCTTGAGGAATTCTACCACAACTAGCTCAAGGAGAAGAAAAAAGCAGAAGAAAGACAAAAAGAAGA AATTCAGCACTAAATCCCAGGTTGTAGAGAAACGGAATAGTGGGAAGCTGGGTTGGTACTATTCTCTGAAATCAGCCAGTTATAGTTTGTTACAAGCTTT CAGGCAGCCGATCATACTAAGATACACACACATCGGATTGTCCTTGCTCACTTTCCTAGACATGGTTTTGGTATCCCGGGTGAATCTTGCATATGGAATT ACAGATAAGCATATGGTCCTCTTTGGATCTGCCCTTGCTGATGCAATTAACCAATTCAAGTTCATGCCATTCCTCATATTATCTGGGCAATTGTGCCCAC CAGGAATTGAAGGAACTCTATTTGCCCTGTTCATGTCTACAAACAACTTTGGTTCAACAGTTGGATCGTTTGTGGGTGCTGGGTTGGCATCGTTCCTGAA CCTCTCGTCGGGATCTACTGGGAATTGCTATCCAAGTGGCTTGCATCTTTATTCCTGTCCTTTTCCTATTCCTGATACCAAACGAAGCTACAGGGGTATC CAGCACGTAGTAGAATAA
AA sequence Show only first row Show all	>Lus10017090 pacid=23167494 polypeptide=Lus10017090 locus=Lus10017090.g ID=Lus10017090.BGIv1.0 annot-version=v1.0 MIEWTKQMKRSFGGSFLWLVCLIYFTQTDSNYDVDVDLSFPPEIHCIAGFRSFVWTAVSYQLKDKLKLSPSASQFVSSLAFFPWSIKPLYGNSSWYLMVL LTAQNLGSAMADVVVDAMIAEAVRFEKASFAGDLQSLSWFSMALGGICGSLLGGFALSNLPIDTIFLLFSVLPAIQLFSCCLVEENPVVSEVVSTSDDDA NGSSHSDDSSCFLRNSTTTSSRRRKKQKKDKKKKFSTKSQVVEKRNSGKLGWYYSLKSASYSLLQAFRQPIILRYTHIGLSLLTFLDMVLVSRVNLAYGI TDKHMVLFGSALADAINQFKFMPFLILSGQLCPPGIEGTLFALFMSTNNFGSTVGSFVGAGLASFLNLSSGSTGNCYPSGLHLYSCPFPIPDTKRSYRGI QHVVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54860			Major facilitator superfamily ...		Lus10017090 [exp]	0	1
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	4.5	0.8012
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	9.7	0.7792
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	13.8	0.7466
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	14.0	0.7617
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	16.3	0.7573
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10017638 [exp]	21.8	0.6764
AT4G18530			Protein of unknown function (D...		Lus10002991 [exp]	25.5	0.7454
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	27.9	0.7507
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	29.5	0.7129
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10030450 [exp]	30.0	0.7524

Compare expression of checked genes

Lus10017090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.