Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27620 409 / 1e-143 CYCH;1 cyclin H;1 (.1) AT5G48630 71 / 5e-14 Cyclin family protein (.1.2) AT5G48640 69 / 2e-13 Cyclin family protein (.1) AT5G45190 64 / 4e-11 Cyclin family protein (.1.2) AT1G35440 63 / 4e-11 CYCT1;1 cyclin T1;1 (.1) AT4G19600 62 / 2e-10 CYCT1;4 Cyclin family protein (.1) AT4G19560 49 / 3e-06 CYCT1;2 Cyclin family protein (.1) AT2G26430 43 / 0.0002 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037811 [exp] 593 / 0 AT5G27620 435 / 7e-154 cyclin H;1 (.1) Lus10003151 [exp] 64 / 1e-11 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 64 / 1e-11 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2) Lus10040640 [exp] 54 / 9e-08 AT5G45190 587 / 0.0 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G027700 [exp] 464 / 2e-165 AT5G27620 427 / 6e-151 cyclin H;1 (.1) Potri.002G246800 [exp] 62 / 6e-11 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2) Potri.014G194900 [exp] 59 / 6e-10 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.003G148800 [exp] 54 / 6e-08 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 54 / 7e-08 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 52 / 3e-07 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 50 / 2e-06 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.001G081600 [exp] 48 / 5e-06 AT5G45190 636 / 0.0 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017091 pacid=23167445 polypeptide=Lus10017091 locus=Lus10017091.g ID=Lus10017091.BGIv1.0 annot-version=v1.0 ATGGCGGATTTCCAGAATTCGACCCACCGCGCCAAGTGGATCTTCACCCCTCAAGAGCTAGTCGACAAGTACAAAACTACAAATCAAAGAGCTAAGCAAA TGCTAGAGAAGTGTGGGACTGCAAAAGTAGAAGTAGATGCTGATGGATCGGTGACTCACGCTGAACCTCAAGCCCTTAACACAAAAGAAAGTGATAAGCA TTCTCGTCCGAAGTCCCTTAGTGTCGAGGAGGAAGAGTTCATGCGCGTGTACTACGAGTCTAAGCTTCGAGAAGTATGCGGTGCTTTCTACTTCCCTCAT AAAATCCAGGCAACCGCGCTTACGTATTTCAAGAGGTTCTATCTTCAATGGTCTGTCATGGAGCTTGACCCTAAACATATAATGTTAACGTGCATATATT CAGCGTGTAAGATAGAGGAAAATCATGTATCGGCTGAGGAGCTTGGTAAAGGGATTTCGCAGGATCATCAAATGATACTCAATTTTGAGTTGATAGTTCT TCAGAGCTTGGGATTTGACCTTATTGTCTATGCACCTTACCGCCCGGTTGAAGGTTTTATACACGATATAGAGGATTCCTCTCATTCAGCTGATGACCAA ATTCAGATGCTAAAGGATAGTGCGATCGCTGAGGTTGACAAGATCATGTTTACCAATGCACCGCTTCTGTTCACTCCAGGGCAGTTAGCACTAGCAGCTT TGCGGAATGCGAATGAGGTCCACGGGGTTGTTGATTTCGAAAGTTACCTTCATAACATTCTCATACGCCAGAGTTCGGAGCACACCGTTTCAGAGCTGCT TTTGATTTTAGATTCCGTAGAGAAGTACAAATTCCCTACAGAAAAGGATATGAAGCACATTAATCGCAAGCTGAAATCGTGTTGGGGCCATGGCTCTCAT GATGATAAAAAACGGGAGAAGAAATCGAAGCACAGGTCTCATAAGAGCTCAAACGAATCAAGACACGCCCCAGCTCCTGTATAA
AA sequence Show only first row Show all	>Lus10017091 pacid=23167445 polypeptide=Lus10017091 locus=Lus10017091.g ID=Lus10017091.BGIv1.0 annot-version=v1.0 MADFQNSTHRAKWIFTPQELVDKYKTTNQRAKQMLEKCGTAKVEVDADGSVTHAEPQALNTKESDKHSRPKSLSVEEEEFMRVYYESKLREVCGAFYFPH KIQATALTYFKRFYLQWSVMELDPKHIMLTCIYSACKIEENHVSAEELGKGISQDHQMILNFELIVLQSLGFDLIVYAPYRPVEGFIHDIEDSSHSADDQ IQMLKDSAIAEVDKIMFTNAPLLFTPGQLALAALRNANEVHGVVDFESYLHNILIRQSSEHTVSELLLILDSVEKYKFPTEKDMKHINRKLKSCWGHGSH DDKKREKKSKHRSHKSSNESRHAPAPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10017091 [exp]	0	1
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	5.7	0.7922
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	10.4	0.7838
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	10.6	0.7867
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	13.4	0.7766
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	15.2	0.7639
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	16.0	0.7555
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	16.6	0.7470
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	17.0	0.7481
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10005770 [exp]	28.1	0.7183
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	32.7	0.7620

Compare expression of checked genes

Lus10017091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.