Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27660 364 / 2e-123 Trypsin family protein with PDZ domain (.1) AT5G39830 97 / 6e-22 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT3G27925 84 / 2e-17 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT4G18370 72 / 6e-14 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT1G65640 46 / 4e-05 DEGP4 DegP protease 4 (.1) AT5G40560 42 / 0.0006 DEGP13 DegP protease 13 (.1) AT5G36950 42 / 0.0009 DEGP10 DegP protease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037815 [exp] 643 / 0 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10008781 [exp] 83 / 7e-17 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 79 / 1e-15 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10042822 [exp] 74 / 3e-14 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10028120 [exp] 71 / 2e-13 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10022234 [exp] 64 / 7e-11 AT3G27925 623 / 0.0 DegP protease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018300 [exp] 414 / 1e-142 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.001G348800 [exp] 80 / 3e-16 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.004G129200 [exp] 80 / 4e-16 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 72 / 6e-14 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.018G001500 [exp] 69 / 2e-12 AT5G27660 102 / 2e-23 Trypsin family protein with PDZ domain (.1) Potri.018G001301 [exp] 64 / 4e-11 AT5G27660 119 / 4e-30 Trypsin family protein with PDZ domain (.1) Potri.014G135200 [exp] 43 / 0.0004 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.002G207200 [exp] 42 / 0.0006 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10017093 pacid=23167481 polypeptide=Lus10017093 locus=Lus10017093.g ID=Lus10017093.BGIv1.0 annot-version=v1.0 ATGAGCGAGAAGCGAGGAACTGCTACAAAATTTGCGAGAGCTCAGTTCAAGTTTGTGAAGGAAGAAGCCCAAGACTCATTTGGCTACACGCCGATTCACT GTGTCACAACCAGCGAGGAACTTCCCAGGAGAAAAGCTTCGTTCCTTCGGATCGCCGCGGCCGCCGGCGGTGGAGCAGTTCTTCTTTACGCTAATGATGA TCCTGTTTCCAGACCGAGGATATCATTCTCAGTTCCTGAGCAATGGCGCTTATCACAGTACTTGATTTCTTCCACTTCAGCAGAACGCTGGCAGTTTGGA AATCTTTCCTTCTTTTCGCCTAGATTCAATCTTGTTCCTGATATCATCAATGGAAGGAGTAGTGAAAGTTTTGGAGATGGCCACAAAGCAAGCTGTGGGT GTTTGGGAAGGGATACAATTGCCAATGCAGCTGCTAGGGTTGCTCCAGCTGTTGTTAATCTTTCTGCTCCACAAGGGTTCTACGGGTTCCCCGGTGGAAA GAGCATTGGCTCTGGGACGATTATAGACGCAAATGGTACTATCTTGACATGTGCTCACGTCATTGTTGATTACCGCGGCATGCAACCCATGAATCCCTCA TCTAAGAGAAAGATAGGTGTGACGTTGCAAGATGGCCGAACATTCGAAGGTACAGTCCTGAATGTTGATTTACATTCTGACATTGCCATTGTGAAGATAA ACTCCAAAACTCCATTGCCAACCGCCAAACTCGGTTCATCAAGTAAGATCCGACCTGGGGAATGGGTGCTGGCCGTGGGCTGCCCGTTGTCTCTGCAGAA TACTGTTACAATGGGCATCATAAGCTGCGTTGATCGTAAAAGCAGCGACCTGGGTCTTGGAGGAGTTCGGAGAGAGTATCTACAGACAGATTGTTCTATC AATGCGGGAAATTCGGGTGGACCACTCGTTAACATCGAAATGATAGAACTGAATGACATGATCATTGCTCAGCTGAAGGAGGGAGATCCCACATTCCCTG ATGTGCACGATGGCATCTTCGTACCTATGGTAACACCAGGATCACCTGCAGACAATGCAGGATTCCGACCGGGTGATGTCTTGGTTCAATTCGACGATAA ACCCGTTGGAACCATCAAAGAGGTGATCGATCTCATGGATGATAGAGTAGGCGTGGCTTTGAAGGCTGTAGTGAAGAGGCCCAAGAACGTTACAGTCACC TTAACGGTCATCCCAGAAGAAGGAAACACAGACATTTGA
AA sequence Show only first row Show all	>Lus10017093 pacid=23167481 polypeptide=Lus10017093 locus=Lus10017093.g ID=Lus10017093.BGIv1.0 annot-version=v1.0 MSEKRGTATKFARAQFKFVKEEAQDSFGYTPIHCVTTSEELPRRKASFLRIAAAAGGGAVLLYANDDPVSRPRISFSVPEQWRLSQYLISSTSAERWQFG NLSFFSPRFNLVPDIINGRSSESFGDGHKASCGCLGRDTIANAAARVAPAVVNLSAPQGFYGFPGGKSIGSGTIIDANGTILTCAHVIVDYRGMQPMNPS SKRKIGVTLQDGRTFEGTVLNVDLHSDIAIVKINSKTPLPTAKLGSSSKIRPGEWVLAVGCPLSLQNTVTMGIISCVDRKSSDLGLGGVRREYLQTDCSI NAGNSGGPLVNIEMIELNDMIIAQLKEGDPTFPDVHDGIFVPMVTPGSPADNAGFRPGDVLVQFDDKPVGTIKEVIDLMDDRVGVALKAVVKRPKNVTVT LTVIPEEGNTDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27660			Trypsin family protein with PD...		Lus10017093 [exp]	0	1
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	8.4	0.8468
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	8.5	0.8283
AT1G65290		MTACP2	mitochondrial acyl carrier pro...		Lus10020221 [exp]	11.5	0.8156
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	15.3	0.8369
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	20.1	0.8290
AT2G34560			P-loop containing nucleoside t...		Lus10023310 [exp]	20.9	0.8393
AT5G62270			unknown protein		Lus10021682 [exp]	21.4	0.8187
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	22.1	0.8260
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002900 [exp]	23.3	0.7405
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	23.7	0.8341

Compare expression of checked genes

Lus10017093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.