Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02400 305 / 4e-103 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 274 / 4e-91 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G30040 251 / 7e-82 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 229 / 2e-73 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G78440 213 / 6e-67 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT1G78550 114 / 8e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 110 / 1e-27 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 110 / 2e-27 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT1G80330 108 / 7e-27 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT5G07200 106 / 7e-26 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037816 [exp] 536 / 0 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10025016 [exp] 308 / 2e-104 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 306 / 2e-103 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 303 / 4e-102 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 195 / 3e-60 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 159 / 1e-47 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10006350 [exp] 125 / 6e-33 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 122 / 1e-31 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10015016 [exp] 119 / 8e-31 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149700 [exp] 373 / 1e-129 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.008G101600 [exp] 372 / 2e-129 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.002G191900 [exp] 347 / 2e-119 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.014G117300 [exp] 335 / 1e-114 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.001G378400 [exp] 267 / 3e-88 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 268 / 6e-88 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 252 / 2e-82 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.015G002800 [exp] 118 / 8e-31 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355100 [exp] 116 / 9e-30 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.011G164200 [exp] 115 / 1e-29 AT4G10500 305 / 4e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10017094 pacid=23167390 polypeptide=Lus10017094 locus=Lus10017094.g ID=Lus10017094.BGIv1.0 annot-version=v1.0 ATGGTGGTGGCATCTCCTCCGCCTCTAGCCGGCACCGAGAAGGCGGCGGCACTCCCCCGCCTCCCAACGGTTGACATGTCGGGCCCACGCGATGAGGTGG CCCGACAAATAGTGAAGGGGGGAGCAGAAGATGGCGAGGAGGGACTCGGGTTCTTCGGCCGACCCGCCCAGGAAAAGCAGCGGGCCGGACCCGCCGACCC TTTCGGGTACGGGTGCAAGAACATCGGGTTCAACGGCGACGTCGGGGAAGTCGAGTACGTGATGCTGAATACCGATCCTCGCTCCATTGCGGAGAGGTCG TTGACCATCAACTCCAACGACCCGACGACGTTCAGTTCCACTGTGAGCGGGTACATTGAAGCGGTAAAGGAAGTAGCATGCGAGATCCTAGATTTGATGG CGGAAGGGATGTACATACCTGATACGTCAGTGTTTAGTGATCTCATCAGGGACGGCCATAGTGATTCTGTTCTCCGTCTGAATCACTACCCTCCATTTCT CCTCCCTTCACCACCAACAGTCGATCACGCTGACGCCGAAGTTGCGACGATAGGATTTGGGGCGCATACTGACCCTCAGATCCTAACCATCTTAACATCC AACGACGTTCCTGGCCTCCAGATCCACGTCGACCCGAACATGTGGGTCCCCGTATCGCCTGACCCCACCGCCTTCTTCGTTAATGTTGGTGACGTATTAC AGGCGATGACAAATGGAAGAATGATAAGCGTAAAGCATAGGGCCCTCAACCTCAACTCGCCAAAGTCCAGGATGTCAATGGCGTATTTTGCAGCCCCACC ACTAGAAACCACCATCTCTGTTCTGCCTCAAATGATTACTCCTTCCAGCCCTAATTGTCTGTTCAGACCTTTCACCTGGGCTGATTACAAGAAGGCAGCT TACTCCCTTCGCCTTGGAGATTCACGCCTCGACCTTTTCACTGTTACTAACTCCTAA
AA sequence Show only first row Show all	>Lus10017094 pacid=23167390 polypeptide=Lus10017094 locus=Lus10017094.g ID=Lus10017094.BGIv1.0 annot-version=v1.0 MVVASPPPLAGTEKAAALPRLPTVDMSGPRDEVARQIVKGGAEDGEEGLGFFGRPAQEKQRAGPADPFGYGCKNIGFNGDVGEVEYVMLNTDPRSIAERS LTINSNDPTTFSSTVSGYIEAVKEVACEILDLMAEGMYIPDTSVFSDLIRDGHSDSVLRLNHYPPFLLPSPPTVDHADAEVATIGFGAHTDPQILTILTS NDVPGLQIHVDPNMWVPVSPDPTAFFVNVGDVLQAMTNGRMISVKHRALNLNSPKSRMSMAYFAAPPLETTISVLPQMITPSSPNCLFRPFTWADYKKAA YSLRLGDSRLDLFTVTNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	0	1
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10037816 [exp]	1.0	0.9773
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	2.4	0.9616
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10028271 [exp]	5.5	0.9541
					Lus10025421 [exp]	7.7	0.9437
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	8.8	0.9590
AT1G67910			unknown protein		Lus10023632 [exp]	8.9	0.9559
AT3G14470			NB-ARC domain-containing disea...		Lus10016316 [exp]	12.2	0.9378
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	12.4	0.9572
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	14.4	0.9508
AT5G41810			unknown protein		Lus10003901 [exp]	17.1	0.9575

Compare expression of checked genes

Lus10017094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.