Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06500 906 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT1G56560 868 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 852 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT5G22510 759 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT4G34860 592 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT4G09510 589 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 583 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 581 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G72000 572 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037817 [exp] 1305 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10031431 [exp] 902 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10010900 [exp] 900 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10043375 [exp] 777 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 774 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10033144 [exp] 600 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 598 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10014824 [exp] 590 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 589 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101500 [exp] 1016 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.005G010800 [exp] 905 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.013G006600 [exp] 898 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 753 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G186500 [exp] 745 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 744 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G167500 [exp] 600 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 596 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 590 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.013G110800 [exp] 586 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10017095 pacid=23167398 polypeptide=Lus10017095 locus=Lus10017095.g ID=Lus10017095.BGIv1.0 annot-version=v1.0 ATGAGCACCAGTAGTTCAATCCGAATCTCTACCATGAAGCCCTGTTGTAGAATCCTCATAGGGTATAGGGGATCTTCAATCTTTGGATCTCGTGCCCGGA TGTTAGGGAATCCCAATTCGTCGAAATCGCATTCGAAATCGATCCATGCCCGTGGATCGAACTTCTTACGTAGTAGGTATAATGACAGGTCTAGATGTAC AGTTCCGAGATGTATAGCTCAACCTAGTATCCGTGGAGCTTTTAGTATCTCCACTTCTTCCAGTTGCGCTCAATCTGTGCCTGGTTTTTATGCCAACAGA GGTTGTAGTAGTATTAGTAGTAGTAGTAGTAGTAGTAAGAGGGGTGTTTTATTAATCCCCAGGGTCGCGTCGAATTATAGGAACCATTCGACGTCTTTAG ATAGTCATAGTAATGAGAAAGGGTTCGAGTCAATTTACATTCAAGGAGGGTTGAATGTGAACCCTCTAGTGATTGAAAAGATTGAGAATGGAATTGAAAA AGAAGAAGGGAAGTCTAGTAGTAGGATAGTTGTGAACGGGTCTAGTGTAGACTTGGATTATTTCAAGAAGTTGAATGAAAAAACCCCCACCCCCACCACC ACTAAGGACGAGCGAGTTGCGTCTGAGATTGAGAAAGAGGCTTGGAAGTTGCTTCGAGCTGCCACTGTTTCGTACTGTGGCAACCCGGTTGGGACTGTTG CTGCTAATGATCCTGGTGATAAGCAACCTTTGAACTATGATCAAGTCTTCATTCGGGATTTCGTCCCGTCTGCCCTTGCCTTTTTGCTTAATGGGGATGG TGAGATCGTCAAGAACTTCCTCCTTCACACATTGCAGTTACAGAGTTGGGAGAAGACTGTGGACTGTTACAGTCCTGGACAAGGGTTAATGCCAGCAAGC TTCAAAGTTAGATCTGTGCCCTTAGAAGGAGCTGAAGGAGAATTTGAAGAGGTTCTTGATCCTGATTTTGGTGAATCTGCCATCGGCCGTGTCGCTCCTG TTGATTCAGGGTTATGGTGGATTATTATGTTGAGAGCGTATGGGAAGATCACTGGGGACTATGCATTACAAGAGAGGGTCGATGTCCAGACAGGCATAAG ACTGATACTTAACCTGTGTTTAAGTGATGGATTCGACATGTTCCCTACTCTACTAGTGACTGATGGTTCGTGCATGATTGATAGACGGATGGGTATTCAT GGGCATCCTCTTGAAATCCAGGCTTTGTTCTATTCGGCTCTCCGATGTGGCCGGGAGGTACTCACAGTCAATGATGGAACCAAGAACTTGGTGGCTGCAA TCAATAAGAGACTCAGTGCACTCTCATTTCACATGAGAGAGTATTATTGGGTGGATATGAAGAAGATCAATGAAATCTACCGATACAAAACTGAGGAATA CTCAACTGATGCAGTCAATAAGTTCAATATCTATCCTGAACAAATCCCTACTTGGCTTGTGGACTGGATCCCGGAGAAAGGCGGCTACCTAATGGGTAAC CTTCAACCTGCTCATATGGACTTCAGGTTCTTCACTCTCGGCAATCTTTGGGCCATTATCTCCTCCTTGGGAACTCGCGAACAGAGCGAAGGTATATTGA ACTTGATCGATGAGAAATGGGACGATCTCGTATCCCATATGCCTCTTAAGATCAGCTACCCAGCTTTGGAAGGAGAAGAATGGCGCATAATTACCGGCAG CGACCCTAAGAACACCCCATGGTCATATCACAATGGTGGATCTTGGCCGACACTCCTATGGCAGTTCACATTGGCGTGCATCAAGATGGGAAGACCAGAA CTGGCACAGAAGGCTGTGAGTCTTGCTGAGCAAAGGCTATCAGAAGATCAATGGCCGGAATACTATGACACTCGCGGTGGACGGTTCATAGGCAAACAAT CTCGCAACTACCAGACATGGACAATTGCCGGCTTTCTAACGTCAAAGATGCTTTTGGAGAACCCAGAGAAAGCGTCTTTACTGTTCTGGGAAGAGGACTA TGAGCTGCTCCAGACGTGTGTTTGTGGGTTGGGTAAAACCAGTCGTACGAAATGCTCTCGGTTCGCAGCCAAATCACAGGACGGTGCCTGA
AA sequence Show only first row Show all	>Lus10017095 pacid=23167398 polypeptide=Lus10017095 locus=Lus10017095.g ID=Lus10017095.BGIv1.0 annot-version=v1.0 MSTSSSIRISTMKPCCRILIGYRGSSIFGSRARMLGNPNSSKSHSKSIHARGSNFLRSRYNDRSRCTVPRCIAQPSIRGAFSISTSSSCAQSVPGFYANR GCSSISSSSSSSKRGVLLIPRVASNYRNHSTSLDSHSNEKGFESIYIQGGLNVNPLVIEKIENGIEKEEGKSSSRIVVNGSSVDLDYFKKLNEKTPTPTT TKDERVASEIEKEAWKLLRAATVSYCGNPVGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLNGDGEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPAS FKVRSVPLEGAEGEFEEVLDPDFGESAIGRVAPVDSGLWWIIMLRAYGKITGDYALQERVDVQTGIRLILNLCLSDGFDMFPTLLVTDGSCMIDRRMGIH GHPLEIQALFYSALRCGREVLTVNDGTKNLVAAINKRLSALSFHMREYYWVDMKKINEIYRYKTEEYSTDAVNKFNIYPEQIPTWLVDWIPEKGGYLMGN LQPAHMDFRFFTLGNLWAIISSLGTREQSEGILNLIDEKWDDLVSHMPLKISYPALEGEEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRPE LAQKAVSLAEQRLSEDQWPEYYDTRGGRFIGKQSRNYQTWTIAGFLTSKMLLENPEKASLLFWEEDYELLQTCVCGLGKTSRTKCSRFAAKSQDGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	0	1
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	1.7	0.9282
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	2.4	0.9398
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	3.2	0.9396
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	3.9	0.9250
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	5.3	0.9275
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	6.0	0.9008
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	6.2	0.8671
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	6.5	0.9199
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	7.9	0.9112
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10040909 [exp]	9.0	0.8482

Compare expression of checked genes

Lus10017095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.