Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06760 106 / 1e-28 Drought-responsive family protein (.1.2) AT5G49230 103 / 1e-27 HRB1 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) AT1G56280 96 / 1e-24 ATDI19 drought-induced 19 (.1.2) AT3G05700 83 / 1e-19 Drought-responsive family protein (.1) AT5G26990 79 / 4e-18 Drought-responsive family protein (.1) AT4G02200 73 / 7e-16 Drought-responsive family protein (.1.2.3) AT1G02750 57 / 3e-10 Drought-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037819 [exp] 273 / 7e-94 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10037717 [exp] 164 / 5e-47 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10015214 [exp] 108 / 2e-29 AT5G26990 194 / 5e-63 Drought-responsive family protein (.1) Lus10031467 [exp] 98 / 3e-25 AT5G26990 253 / 1e-85 Drought-responsive family protein (.1) Lus10013420 [exp] 79 / 3e-18 AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2) Lus10010305 [exp] 76 / 8e-17 AT3G06760 108 / 5e-29 Drought-responsive family protein (.1.2) Lus10001462 [exp] 60 / 5e-11 AT3G05700 124 / 5e-35 Drought-responsive family protein (.1) Lus10002441 [exp] 46 / 1e-06 AT5G26990 95 / 3e-25 Drought-responsive family protein (.1) Lus10015412 [exp] 47 / 2e-06 AT5G26990 123 / 1e-34 Drought-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000800 [exp] 152 / 1e-46 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.008G213400 [exp] 146 / 3e-44 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.005G020900 [exp] 113 / 3e-31 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.013G011200 [exp] 110 / 3e-30 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.002G200500 [exp] 76 / 6e-17 AT3G05700 152 / 7e-46 Drought-responsive family protein (.1) Potri.014G125500 [exp] 72 / 2e-15 AT3G05700 148 / 2e-44 Drought-responsive family protein (.1) Potri.019G027300 [exp] 69 / 2e-15 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.012G086500 [exp] 45 / 5e-06 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2) Potri.011G057200 [exp] 44 / 3e-05 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10017097 pacid=23167467 polypeptide=Lus10017097 locus=Lus10017097.g ID=Lus10017097.BGIv1.0 annot-version=v1.0 ATGGCTTCCGACCCCTGGGGCTCTCGCTTCTCCACTTCTTCATCTCGACGTCACCAAGTTCGGCCTGGTTCAGATCTATTTGAAGATGAAAGGGAATTGG AAGATGATCCCAAAGCCGAGTTCTTGTGTCCCTTTTGTGCCGAGGATTTTGATGTTTTGGGACTTTGCTGTCATATGGACGAGGAGCATCCTGTTGAGAC CAAAAATGGGCATTACGTGCAGCGTAAGAGACGATTGCGTAAAGGTGGATCTAACTCGACATTCTCTTCACTGTTGAAGAAAGAACTCCGCGATGGCAGC TTACAGTCACTCCTCGGGGGTTCTTCCTATGTCTCCAGTACAGAGCCTGATCCGTTGCTTTCATCGTTCATGTACACTCCATCTGGACATGATGAGCCTC CGAGTGTTCTCCGTGCTGCTTCAGTTGAAACAAGTCCAGCAATGGATGATAGCATGATCAATGCATCTGTAATTAGGGAAGTTGAGCCATTGGCGCCTGT ATCTGAGAAGGAAACAGAAGAGAAGTCTCTGAGGTGCGAGTTTGTTCGAGGACTGGTGTTGTCCACCATTCTTGATGAGTTATGA
AA sequence Show only first row Show all	>Lus10017097 pacid=23167467 polypeptide=Lus10017097 locus=Lus10017097.g ID=Lus10017097.BGIv1.0 annot-version=v1.0 MASDPWGSRFSTSSSRRHQVRPGSDLFEDERELEDDPKAEFLCPFCAEDFDVLGLCCHMDEEHPVETKNGHYVQRKRRLRKGGSNSTFSSLLKKELRDGS LQSLLGGSSYVSSTEPDPLLSSFMYTPSGHDEPPSVLRAASVETSPAMDDSMINASVIREVEPLAPVSEKETEEKSLRCEFVRGLVLSTILDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	0	1
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	1.0	0.9414
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10002264 [exp]	3.5	0.8883
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	7.7	0.8772
AT4G25030			unknown protein		Lus10033276 [exp]	7.9	0.8443
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10001125 [exp]	8.4	0.8194
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	8.5	0.8470
AT5G26990			Drought-responsive family prot...		Lus10031467 [exp]	9.4	0.8927
AT1G03290			unknown protein		Lus10012382 [exp]	11.0	0.8770
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	14.5	0.8504
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	15.7	0.8229

Compare expression of checked genes

Lus10017097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.