Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17205 1167 / 0 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 246 / 4e-67 UPL7 ubiquitin-protein ligase 7 (.1.2) AT1G55860 174 / 6e-44 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 170 / 1e-42 UPL2 ubiquitin-protein ligase 2 (.1) AT5G02880 93 / 9e-19 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 87 / 5e-17 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT4G12570 71 / 2e-12 UPL5 ubiquitin protein ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037820 [exp] 1297 / 0 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10035589 [exp] 259 / 8e-72 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10008636 [exp] 204 / 2e-53 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10032830 [exp] 179 / 3e-45 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 176 / 2e-44 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 166 / 2e-41 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10019908 [exp] 94 / 4e-19 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10027841 [exp] 87 / 6e-17 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10010493 [exp] 87 / 7e-17 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G150000 [exp] 1268 / 0 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 1239 / 0 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G096500 [exp] 256 / 1e-70 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.002G110500 [exp] 176 / 1e-44 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 173 / 1e-43 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 171 / 7e-43 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G085200 [exp] 92 / 1e-18 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.004G174700 [exp] 89 / 1e-17 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.009G134300 [exp] 87 / 5e-17 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.006G132000 [exp] 86 / 1e-16 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10017098 pacid=23167407 polypeptide=Lus10017098 locus=Lus10017098.g ID=Lus10017098.BGIv1.0 annot-version=v1.0 ATGTTCTTCAGCGGGGATCCAACGACTCGCAAGCGAGTCGACTTGGGAGGCCGGAGTTCTAAAGAGAGAGACAGGAAGAAGCTTCTGGAGGAGACGAGAT TGGAGCGCAATCGCAGGTTGTGGCAGCGCCAACAGATTGCAGCTGCGATCACTATTCATGTTAGGTCTTCTTTTGATCAGTATTTTGTTTGTTGCTTCAG AATTGTTGCTTCAGAATTAGGAAATCACGACCATGGAAAGCTAGGAAGAGTTTGGGGGCGGAGGACTCGTGGAAACCAGGGGTTTGTTCAACAGTTCAAG CATTGTTTGTGTCCAGAGTCCGATTACCTTCGTCAGCTGTTCTTTTTCTTCGATCCTCGAAATAATGGTGATCTTGTGGTTCTCGTGGAGACCTGTAGAT TGATCCTGAATGTTGTTGGACATACAGGTGATATTGTGGGCCTTTTTTCTGGTATGGATTATCCAACAATGCATTCTATGGTGGATCATAGAGTGAAACG CCTTGCTTATATCTGTGTTCTTTCTCTACATCGAAACAGATTACATTTTAGAAACCGATTGCTACTTCCAGAACCAGAATCAGACAAGCAAGCTACAACA GTGCTTGAAGCAGTTGCCACTTTGATAGATCCCAAACTTCCATGGGCATGCAAGACTGAGACTTCTGATTTTATATCGAATGCTGCGCAGGAAGATGTGA AGACCTCCGGCAGCACCTGGAAAGTTTCTGGACTGGAACACATCCTCGTTCTCTTGGTTTCTCACACTGGCCAGAATCTGTGTAGCTGTCCCGATGTTGA TCCACAGTGGAGCTTTACCTCACAAATGCTTACAATTCCTTTCGTCTGGAAGCTTTTCCCAAGTTTAAAACAGGTTCTTTCAAATCAGGGTCTCAGTCAA CATTACATTCATCAGATGTCATTGTGTCTGCCGAACCATGTCAATGTGCTGCCTAGTGATGTTTCTCTGGAGTATCCTGGGTACGCATGTCTGCTTGGAA ACATTGTAGAAGCAGCTGGAGTTACATTATTGCAGCCTGCTTGTCCATTTGAAATGGCTGTTGACCTTGCAACTGTCGCAACGTCCCTGTTGGAAGCTTT GCCTGCCATAAAATTGTCAAGCCAGAAAGCTATAGAAGATTCAGCTATGGTCGATGATGATGGGAATTCTCCTGACGATATGCAAATAGTTTTGGATAAA GATTTGGAGCGGCAGATAATAAGTGCTATAGATTCACGCTTTCTGCTGCAATTGGTATCCCTTCCATATGCTCTTGCCATATTTTTCTATGGGTCTTGGA TTAAGACTGCAATGATTAACGTCTTATTTGGAGGGATTTCATCAGCCAGTGGACAAGATGATAGAGCTATTGGTGCTGCTTGTGCTTTTCTGCACGTCAC ATTCAACGCTTTACCTCTTGAGCGCATCATGACTGTTCTGGCTTATAGGACTGAACTTGTTCGAGTTCTTTGGGAGTTCATGAAAGACTGTCATGACAAT CAAAGATGGTCATCAGTATCTGAGCAGCTGTCATTCTTACCAGTCGATGCACCTGGTTGGTTGTTGCCTTTGGCTGTTTTCTGTCCTGTATATAAGCATA TGCTTATGATAGTTGATAATGAGGAGTTTTATGAACAAGAAAAACCACTATCACTGGGGGATATCCGATACTTGATCATTATCCTCAGACAGGCATTATG GCAGCTACTGTGGGTTAATTCTATGGGTCACAATGCTTCATCAAAACCTGCTATGTACACAAGCTCCTCTACTTACAAGCCGAATCCCATGGAGTCTATT AAACACAGAGTTGGTATTGTGGCCTCTGAGTTGCTCTCACAGTTGCAAGATTGGAACAACAGAAGAGAATTCACCCCACCAAGTGATTTTCATGCAGATG GTGTGGATGATTACTTTATTTCTCAGGCCGTAACAGATGGAACTAAAGCAAATGAAATACTGAAGCTAGCTCCGTTTTTGATTCCTTTCACAAGCAGGGT CAAGATTTTTAATTCGCAACTAACGACAATCAAGCAAAGACATGGTCCCCAAGGTGTCTTCGCGAGAAACAGATTTAGAATAAGACGAGACCGTATTCTG GAAGATGCTTATAATCAAATGAGTGCACTATCAGAAGAGGATCTACGGGGATTGATTCGTGTAGCATTTGTCAATGAGCTTGGAGTGGAGGAAGCTGGTA TTGATGGTGGTGGAATTTTTAAAGATTTCATGGAGAATATAACTCGAGCTGCATTTGACGTGCAGTATGGTTTATTTAAGGCTATGTTTGAAGGTATTCT AGTTGATATTCCATTTGCGACATTCTTCTTGAGCAAGCTGAAGCAGAAGTTCAACTATCTCAATGATTTGCCTTCTCTAGATCCAGAATTGTATCGCCAC CTTATATTCCTCAAGCATTATCGAGGTGATATTTCAGGGTTGGAACTCTACTTTGTTATTGTGAACAATGAATACGGAGAACAAACAGAAGAAGAGCTTC TTCCTGGAGGGAGAAATTTGCGTGTGACTAATGAGAATGTCATTACCTTTATCCATCTTGTCTCCAATCATCGTTTGAATTTCCAGATACGGCAACAAAG CTCTCATTTCTTGAGGGGTTTTCAGCAACTCATACAGAAAGATTGGATTGACATGTTCAATGAACACGAACTTCAGCTCTTAATATCAGGTTCGCTAGAA AGTATGGATGTTGATGATCTTCGCACTCACACCAATTATGCTGGTGGTTATCACAAAGAGCATTATGTCATCGAGATGTTATGGGATGTTCTCAAAGGCT TTTCGTTAGAAAATCAAAAGAAATTTCTGAAGTTGATAAATTTCGACATGACTGATTCTCTTAGAGCTGGTGGTAGCGCCACCGAGGAAGCACTTGACCG GCTTCCAACATCCGCCACTTGCATGAATCTTCTCAAACTTCCTCCTTACAGAAGCAAGGAGCAAATGGAAGCGAAATTGATGTATGCGATAAATGCGGAA GCTGGTTTCGATCTGAGCTGA
AA sequence Show only first row Show all	>Lus10017098 pacid=23167407 polypeptide=Lus10017098 locus=Lus10017098.g ID=Lus10017098.BGIv1.0 annot-version=v1.0 MFFSGDPTTRKRVDLGGRSSKERDRKKLLEETRLERNRRLWQRQQIAAAITIHVRSSFDQYFVCCFRIVASELGNHDHGKLGRVWGRRTRGNQGFVQQFK HCLCPESDYLRQLFFFFDPRNNGDLVVLVETCRLILNVVGHTGDIVGLFSGMDYPTMHSMVDHRVKRLAYICVLSLHRNRLHFRNRLLLPEPESDKQATT VLEAVATLIDPKLPWACKTETSDFISNAAQEDVKTSGSTWKVSGLEHILVLLVSHTGQNLCSCPDVDPQWSFTSQMLTIPFVWKLFPSLKQVLSNQGLSQ HYIHQMSLCLPNHVNVLPSDVSLEYPGYACLLGNIVEAAGVTLLQPACPFEMAVDLATVATSLLEALPAIKLSSQKAIEDSAMVDDDGNSPDDMQIVLDK DLERQIISAIDSRFLLQLVSLPYALAIFFYGSWIKTAMINVLFGGISSASGQDDRAIGAACAFLHVTFNALPLERIMTVLAYRTELVRVLWEFMKDCHDN QRWSSVSEQLSFLPVDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLGDIRYLIIILRQALWQLLWVNSMGHNASSKPAMYTSSSTYKPNPMESI KHRVGIVASELLSQLQDWNNRREFTPPSDFHADGVDDYFISQAVTDGTKANEILKLAPFLIPFTSRVKIFNSQLTTIKQRHGPQGVFARNRFRIRRDRIL EDAYNQMSALSEEDLRGLIRVAFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKAMFEGILVDIPFATFFLSKLKQKFNYLNDLPSLDPELYRH LIFLKHYRGDISGLELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLE SMDVDDLRTHTNYAGGYHKEHYVIEMLWDVLKGFSLENQKKFLKLINFDMTDSLRAGGSATEEALDRLPTSATCMNLLKLPPYRSKEQMEAKLMYAINAE AGFDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	0	1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	1.0	0.9559
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	2.0	0.8953
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	2.4	0.9059
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	2.4	0.9003
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	3.9	0.8754
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	4.0	0.8724
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10005501 [exp]	4.4	0.8269
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	5.2	0.8561
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	5.9	0.8728
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	6.6	0.8505

Compare expression of checked genes

Lus10017098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.