Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49930 1066 / 0 EMB1441 embryo defective 1441, zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037821 [exp] 1321 / 0 AT5G49930 1427 / 0.0 embryo defective 1441, zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101200 [exp] 1129 / 0 AT5G49930 1464 / 0.0 embryo defective 1441, zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0684 [flax] [poplar] NFACT_RNA-bind PF05670 [flax] [poplar] NFACT-R_1 NFACT protein RNA binding domain CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0511 [flax] [poplar] PF11923 [flax] [poplar] NFACT-C NFACT protein C-terminal domain CL0303 [flax] [poplar] H2TH PF05833 [flax] [poplar] FbpA Fibronectin-binding protein A N-terminus (FbpA)
Representative CDS sequence Show only first row Show all	>Lus10017099 pacid=23167436 polypeptide=Lus10017099 locus=Lus10017099.g ID=Lus10017099.BGIv1.0 annot-version=v1.0 ATGGTGAAGGTCCGGATGAACACGGCCGATGTGGCCGCAGAGGTCAAGTGCTTGCGGAGGCTCATCGGCATGCGTTGCTCTAATGTCTATGATCTCTCTC CCAAGACGTATGTGTTCAAGCTAATGAACAGCAGCGGAGTGACGGAGTCCGGAGAGAGTGAGAAGGTTCTGCTGCTGATGGAGAGCGGCGTTCGCTTGCA CACTACTGCTTATGTTCGGGATAAAAGTAATACTCCTTCGGGATTCACACTTAAGTTGAGGAAGCATATACGTACAAGACGTCTAGAGGATGTCCGGCAG CTTGGATATGATAGGATCATTCTCTTTCAATTTGGACTCGGTGCTAATGCACACTACGTCATACTGGAGTTGTATGCACAAGGAAACATCCTTCTCACTG ATCCTGATTTTACTGTGCTGACTCTTCTCAGATCACATAGAGATGATGATAAAGGGATCTCGATCATGTCAAGGCACCGATATCCTACTGAGATTTCTCG AGTTTTTGAACGAACAACCACAAAAAAGTTGCAGGATGCCCTTGCTGCTGTTGACAAACCTGTGGACACTGATACTGTTAAAGCTGATGATGGTGAAGCT GAAGTCTCTGACAAACCTAAAAAGGAAAAACAGGGTAAGCAGAAAGGAGGCAAAGCTTCTGAGCCGAAGAAAAATTCTAATGAAGGGAATCGCGCCAAAC AAGCAACACTGAAGACTGTTCTTGGCGAAGCGTTGGGTTACGGTCCTCAACTTTCTGAACATATGATATTAGATGCGGGTCTGGCTCCAAATATGAAACT TTCTGCAAGTGACAAGTTAGATGAAGACTCGATACAAGTTTTGGTCCAGGCTGTCAAGAGATTTGAAGATTGGCTCCAAGACATTATTTCAGGAGATAAA ATTCCTGAAGGATACATTTTGATGCAAAAGCAAAATCTGGGCAAGGATGGTGCACCATCTGAATCTGGCGGACATAGCAAGATGTATGATGAGTTCTGCC CAATCTTGTTAAACCAGTTCAAAACAAGGGAACATGTGAAGTTCGATACATTCGATGCAGCATTAGATGAGTTTTATAGCAAAATTGAAAGTCAACGATC AGAGCAACAACAAAAGGCAAAAGAAGACTCTGCCGTTCAAAAGTTGACTAAGATACGCACAGATCAGGAAAGCCGTGTGCAGAAACTTAGGAAAGAAGTT GACCAGTTTGTGAATATGGCGGAACTAATAGAGTACAACTTGGAAGATGTTGATGCTGCCATCCTAGCTGTTCGTGTTTCTCTTGCCAAAGGAATGAGTT GGGAGGATCTTGCCCGTATGGTGAAGGAAGAGAGGAAATCCGGGAATCCTGTGGCTGCACTTATTGACAAGCTTCATCTTGAAAGGAACTGCATGACATT GCTCCTTAGCAACAATCTTGATGAAATGGATGATGATGAGAAGACTCTCCCAGCAGATAAGGTGGAAGTGAATATAGCTCTTTCAGCTCATGCCAACGCT CGTAGGTGGTATGAAATGAAGAAAAGGCAAGAAAGCAAGCAGGAAAAGACTGTTAAGGCTCATGAGAAAGCTTTTAAAGCAGCAGAGAGAAAAACTCGTA TGCAGCTTTCTCAGGAAAAAGCTGTTGCTACAATATCACACATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTTATCAGCAGTGAGAACTATCT AGTTGTAAGTGGGCGTGATGCTCAACAGAATGAGATGATAGTGAAGCGATATATGTCAAAGGCAGATCTGTATATCCATGCTGAACTCCATGGAGCCTCT AGTACAGTGATCAAGAATCATAGACCTGAACAAGCTGTTCCTCCTTTGACTATAAACCAAGCTGGGTGTTTCACAGTCTGCCACAGCCAAGCATGGGATT CGAAAATCGTCACTAGTGCTTGGTGGGTGTACCCTCACCAAGTGAGTAAAACTGCACCTACTGGAGAATATCTCACCGTTGGAAGCAGTAAACCTCCTAA TGTAAAACTCAGCCGTGGGCAAAAGGGCAAGCTCAAGAAGATGAAGGAGAAATATGCTGATCAGGACGAGGATGAGAGAAGGATTTGGATGGCTTTATTA GCTTCTGCAGGTAATGCACAGAAGAACGCTGGAGAGACGCAACAAGAAGATACAGGTGCTGCAAAGGAAAAGGTTGCTGCCAGTGGCCCCAATGCTGCTC CAAAGGCGCCTCATGGGTGTCAAAACACACGTGCAGGTCCCAATGAGGCTCCAAAGGTGTGTTATCGGTGCAAAAAGACTGGCCACTTATCTCGCGAGTG CCCTGAGCTTTCCAATGAACATGTCGACAGCGAAGTTGCAAACAGGTCCCTTGCGAACGGTCTGAGAAATGAAGCTGCTGCTGATAAGGTGGTCATGGAG GAGGACGATATTCATGAGATTGGCGAAGAAGAGAAGGAGAAACTGAACGATGTGGATTACCTGACCGGAAACCCGCTTCCTAACGATATCCTCTTGTATG CCGTCCCAGTCTGTGGCCCTTACACCGCCCTGCAATCCTACAAGTACAGAGTGAAGATCATCCCTGGCTCTGCTAAGCGCGCTGCAAAAACTGCGATGAA CTTGTTTAGCCATATGCCGGAAGCAAGTGGGAGGGAGAAAGAGTTGATGAAAGCATGCGGAGATCCCGAGCTGGTGGCCGCGATAATCGGGAATGTTAAG ATCAGTGCTGCTGGGCTGACGCAGTTGAAGCATAAGCAAAAGAAAGTGAAGAAGAAGAGCAAATAG
AA sequence Show only first row Show all	>Lus10017099 pacid=23167436 polypeptide=Lus10017099 locus=Lus10017099.g ID=Lus10017099.BGIv1.0 annot-version=v1.0 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYVFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQ LGYDRIILFQFGLGANAHYVILELYAQGNILLTDPDFTVLTLLRSHRDDDKGISIMSRHRYPTEISRVFERTTTKKLQDALAAVDKPVDTDTVKADDGEA EVSDKPKKEKQGKQKGGKASEPKKNSNEGNRAKQATLKTVLGEALGYGPQLSEHMILDAGLAPNMKLSASDKLDEDSIQVLVQAVKRFEDWLQDIISGDK IPEGYILMQKQNLGKDGAPSESGGHSKMYDEFCPILLNQFKTREHVKFDTFDAALDEFYSKIESQRSEQQQKAKEDSAVQKLTKIRTDQESRVQKLRKEV DQFVNMAELIEYNLEDVDAAILAVRVSLAKGMSWEDLARMVKEERKSGNPVAALIDKLHLERNCMTLLLSNNLDEMDDDEKTLPADKVEVNIALSAHANA RRWYEMKKRQESKQEKTVKAHEKAFKAAERKTRMQLSQEKAVATISHMRKVHWFEKFNWFISSENYLVVSGRDAQQNEMIVKRYMSKADLYIHAELHGAS STVIKNHRPEQAVPPLTINQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSSKPPNVKLSRGQKGKLKKMKEKYADQDEDERRIWMALL ASAGNAQKNAGETQQEDTGAAKEKVAASGPNAAPKAPHGCQNTRAGPNEAPKVCYRCKKTGHLSRECPELSNEHVDSEVANRSLANGLRNEAAADKVVME EDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYTALQSYKYRVKIIPGSAKRAAKTAMNLFSHMPEASGREKELMKACGDPELVAAIIGNVK ISAAGLTQLKHKQKKVKKKSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10017099 [exp]	0	1
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	1.0	0.9063
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	2.0	0.8932
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	3.5	0.8815
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	12.6	0.8192
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	13.4	0.8349
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	15.0	0.7788
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	17.6	0.8345
AT3G56870			unknown protein		Lus10018851 [exp]	17.8	0.8274
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	18.2	0.8049
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	20.1	0.8037

Compare expression of checked genes

Lus10017099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.