Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G30510 591 / 0 ARRPS1, RPS1 ribosomal protein S1 (.1) AT3G23700 97 / 8e-22 Nucleic acid-binding proteins superfamily (.1) AT1G71720 91 / 2e-19 PDE338 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) AT5G14580 65 / 7e-11 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G11964 61 / 9e-10 RNA binding;RNA binding (.1) AT4G29060 61 / 1e-09 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037822 [exp] 852 / 0 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10028726 [exp] 96 / 5e-21 AT1G71720 506 / 8e-177 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10028698 [exp] 94 / 3e-20 AT1G71720 516 / 0.0 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10022587 [exp] 74 / 5e-14 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1) Lus10021484 [exp] 59 / 2e-09 AT3G23700 197 / 4e-60 Nucleic acid-binding proteins superfamily (.1) Lus10008763 [exp] 59 / 4e-09 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10011108 [exp] 59 / 5e-09 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10022250 [exp] 59 / 7e-09 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10043229 [exp] 58 / 1e-08 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101100 [exp] 600 / 0 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 578 / 0 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.002G063400 [exp] 100 / 1e-22 AT1G71720 514 / 2e-179 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.005G197900 [exp] 100 / 1e-22 AT1G71720 501 / 2e-174 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.014G148500 [exp] 82 / 7e-17 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.001G347900 [exp] 61 / 9e-10 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.018G083900 [exp] 61 / 1e-09 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10017100 pacid=23167490 polypeptide=Lus10017100 locus=Lus10017100.g ID=Lus10017100.BGIv1.0 annot-version=v1.0 ATGGCGACGTCCATCGCTCAGCATCATCAGTTCGCCGGACTCCGATTTCCGCCGTTGTCGACTCCTCCTCACCTGTCCAAAAGAGCGCCATTCACTTCCT TCCCGCCTACTAGGTACGAAAGGAAGTCCAATTTCATCGTTTCAGCTGTCGGCATATCGAATGCACAGACCAGAGAGAGGGAAGAGCTCAGGCAGCTATT CGAGGATGCTTATGAGCGCTGCCGCACCTCTCCAACGACTGGTGTATCTTTCACCGCTGAGGAGTTCATCTCCGCTCTTGACAACTACGACTTCGAGTCC GAGATTGGCACCACGGTGAAGGGAACGGTATTCATGACGGAGCAATATGGGGCGTTGGTGGACATAACTGCAAAGTCTTCAGCAATTTTGCCACTGGAAG AGGCGTGCATTCACAAGCTGAAGCATGTGGAGGAAGCTGGTATTGTTCCTGGATACACTGGAGAGTTTGAGATAATTGGAGAAAATGAGGCGGACGATAG CTTGATTTTGAGCTTGAAGAGTACTCAGTATGATCTTGCTTGGGAAAGGTGTAAGCAACTTCAAGCTGAGGATGTCACTGTGAAGGGTAAGGTGGGTAAA AATTTGTTGATGTGGATGAGGGTTTTCAATATATTTGCTCTTCTTCCATCTCCAGTATCTAGACCTGTTAAGAACTTGGTTTTCTTGCAGATTGTGGGTG GAAACAGAGGAGGGCTGGTTGCTTTGGTAGAGGGCCTCAGAGGATTCATCCCATTTTCTCAGATGATATCAAATGTAGTAGGAGACGAACTTCTTGGCAA GGAGCTTCCTCTGAAGTTTGTTGATGTCGATGAGGAAGAAACTAGGCTTGTTTTCAGCAACCGGAAGGCCATGGCTGATAGTCAGGCACAATTGGGTATT GGATCAGTGGCCACTGGAGTAGTCCAGAGTCTGAAACCATATGGTGCCTTCATTGATATTGGTGGCATCAATGGCCTTCTCCATGTCAGTCAGATTAGTC ATGACCGTGTTGATGACATTGCAACGGTTCTTCAACCTGGAGATACTCTCAAGGTGATGGTACTCAGCCATGATCGCGAAAGAGGTCGAGTAAGTCTTTC TACAAAGAAGTTGGAGCCTACCCCTGGTGATATGATTCGCAACCCAACCATTGTTTTCGAGAAGGCTGAGGAGATGGCCCAGACATTCAGGCAGAGAATC GCTCAAGCAGAAGCCATGGCGCGAGCTGATATGCTGAGATTTCAACCCGAGAGTGGACTGACTCTAAACTCGGATGGGATATTGGGGCCATCGACGCCAG ACTTGCCAGAAGAAGGGTTAGACTTGAGCGATCTTATTCCAGCAGCGGAAGATTAG
AA sequence Show only first row Show all	>Lus10017100 pacid=23167490 polypeptide=Lus10017100 locus=Lus10017100.g ID=Lus10017100.BGIv1.0 annot-version=v1.0 MATSIAQHHQFAGLRFPPLSTPPHLSKRAPFTSFPPTRYERKSNFIVSAVGISNAQTREREELRQLFEDAYERCRTSPTTGVSFTAEEFISALDNYDFES EIGTTVKGTVFMTEQYGALVDITAKSSAILPLEEACIHKLKHVEEAGIVPGYTGEFEIIGENEADDSLILSLKSTQYDLAWERCKQLQAEDVTVKGKVGK NLLMWMRVFNIFALLPSPVSRPVKNLVFLQIVGGNRGGLVALVEGLRGFIPFSQMISNVVGDELLGKELPLKFVDVDEEETRLVFSNRKAMADSQAQLGI GSVATGVVQSLKPYGAFIDIGGINGLLHVSQISHDRVDDIATVLQPGDTLKVMVLSHDRERGRVSLSTKKLEPTPGDMIRNPTIVFEKAEEMAQTFRQRI AQAEAMARADMLRFQPESGLTLNSDGILGPSTPDLPEEGLDLSDLIPAAED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	0	1
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	1.0	0.9824
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10015380 [exp]	2.2	0.9651
AT3G06670			binding (.1.2)		Lus10021547 [exp]	2.4	0.9615
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	2.4	0.9799
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	4.0	0.9597
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10037372 [exp]	5.5	0.9677
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	8.2	0.9654
AT4G27390			unknown protein		Lus10038584 [exp]	8.3	0.9474
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	12.2	0.9454
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	12.4	0.9474

Compare expression of checked genes

Lus10017100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.