Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G30490 171 / 1e-52 unknown protein AT3G17210 63 / 2e-12 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037824 [exp] 379 / 3e-133 AT5G30490 188 / 8e-59 unknown protein Lus10000094 [exp] 87 / 4e-21 AT3G17210 162 / 6e-53 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Lus10037823 [exp] 86 / 5e-21 AT3G17210 170 / 1e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G151300 [exp] 233 / 9e-76 AT5G30490 181 / 1e-55 unknown protein Potri.010G037500 [exp] 66 / 2e-13 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037200 [exp] 66 / 5e-13 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151000 [exp] 53 / 5e-09 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150900 [exp] 53 / 6e-09 AT3G17210 146 / 8e-47 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150500 [exp] 47 / 7e-07 AT3G17210 100 / 5e-29 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150800 [exp] 45 / 4e-06 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150700 [exp] 41 / 0.0001 AT3G17210 86 / 4e-23 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07572 [flax] [poplar] BCNT Bucentaur or craniofacial development
Representative CDS sequence Show only first row Show all	>Lus10017101 pacid=23167476 polypeptide=Lus10017101 locus=Lus10017101.g ID=Lus10017101.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGAAAGGAGAAGTGAAGCACGTCTTGCTCACGAAATTCAAACCAGAGATCTCAGGAGAGGAGATCGAAAAACTCATCAAGAATTACGCCA ATCTCGTCACTCTCATCGAACCTATGAAGAATTGGATGGCTTATCTGGGTCTAAAACCAAAGGTCAATGGACCTCCTGAAAAGGATTCACAACAGAATGG CTGTAGCAGTCAGCAGCCTAAGGAAATTGGATCTTCCCCAAACAAGTCTAGTGCAACTGTGGATCAAACTTCACAAAAGAATTCTGATAGCTGGAAGAAT TACCTAGGCATGGGAACAAAGCAGGCACAATCATCAGTAAACGATGCATCACTGGAGAGGCGTAATGGTTTGCATACCAGCACCAGTGATGAGGCCAAAA AGCTTGCTGCTGCTGCTCTCTCTGCAGTTAAGGATGCTGCCGCTGCTGCAGCACTCAGGGGAAAGGTCGAGATAACAGAGGTACGGGATTTTGCTGGCCG GGACATTGAGGTTAAGAAGCTTGTCGATGCAGAGTCGAAAGAGGCAGCAGCTGAAAAGGGAAAATCTGCTGCACCTTCGGCGGTGGATGCTGTACTGGAA CAGATTAAGAAGAAACAAAAGCTGAGTGTGCTGGACAAGACGAAGAAAGACTGGGGAGAATTTAAGGATGAGAATAAGGGGGTGGAAGATGAGTTAGAAA CGTACAAGAAGAGTTCAAACCAATATCTGGACAGAGTATCCTTCTTGGAACGCACAGACTACAGGGAATTCGAGAGGGAAAGAGACGCTAGGCTAGCAAT GCAATCCAGGAGACGGATGGACATGCGTGAGGATTAA
AA sequence Show only first row Show all	>Lus10017101 pacid=23167476 polypeptide=Lus10017101 locus=Lus10017101.g ID=Lus10017101.BGIv1.0 annot-version=v1.0 MEEGKGEVKHVLLTKFKPEISGEEIEKLIKNYANLVTLIEPMKNWMAYLGLKPKVNGPPEKDSQQNGCSSQQPKEIGSSPNKSSATVDQTSQKNSDSWKN YLGMGTKQAQSSVNDASLERRNGLHTSTSDEAKKLAAAALSAVKDAAAAAALRGKVEITEVRDFAGRDIEVKKLVDAESKEAAAEKGKSAAPSAVDAVLE QIKKKQKLSVLDKTKKDWGEFKDENKGVEDELETYKKSSNQYLDRVSFLERTDYREFERERDARLAMQSRRRMDMRED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G30490			unknown protein		Lus10017101 [exp]	0	1
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10014585 [exp]	1.0	0.8821
AT3G44590			60S acidic ribosomal protein f...		Lus10026712 [exp]	2.2	0.8356
AT2G34750			RNA polymerase I specific tran...		Lus10026162 [exp]	4.7	0.8279
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	9.1	0.8467
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	20.3	0.8304
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	28.5	0.8323
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10025826 [exp]	30.9	0.7793
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	31.1	0.8177
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	33.9	0.8321
AT1G03330			Small nuclear ribonucleoprotei...		Lus10000666 [exp]	43.8	0.8152

Compare expression of checked genes

Lus10017101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.