Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48030 859 / 0 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 843 / 0 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G16950 221 / 4e-65 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 219 / 5e-64 dihydrolipoyl dehydrogenases (.1) AT3G24170 149 / 3e-39 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G54660 127 / 3e-31 ATGR2, EMB2360, GR glutathione reductase (.1) AT5G03630 49 / 7e-06 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G52880 44 / 0.0002 ATMDAR1 monodehydroascorbate reductase 1 (.1.2) AT3G09940 44 / 0.0003 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037825 [exp] 945 / 0 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 885 / 0 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 880 / 0 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 218 / 4e-64 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 216 / 3e-63 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10011734 [exp] 163 / 3e-44 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10018770 [exp] 142 / 1e-36 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10000758 [exp] 123 / 3e-30 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10024857 [exp] 123 / 8e-30 AT3G54660 864 / 0.0 glutathione reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100800 [exp] 846 / 0 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 793 / 0 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G142100 [exp] 221 / 6e-65 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 220 / 9e-65 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.003G178200 [exp] 157 / 6e-42 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.001G050000 [exp] 156 / 8e-42 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 127 / 2e-31 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.006G114800 [exp] 44 / 0.0003 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2) Potri.001G099600 [exp] 43 / 0.0004 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0608 [flax] [poplar] Reductase_C PF02852 [flax] [poplar] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10017102 pacid=23167451 polypeptide=Lus10017102 locus=Lus10017102.g ID=Lus10017102.BGIv1.0 annot-version=v1.0 ATGGCGATGGCAAGCTTCGCTAGGAAGAAGGCTTACCTGCTAACCAGGAACTTCTCTAACTCCAACCCCGATGCCCTCCGCTTTTCTTATTCCTTTACTA ACTTCTCCCGCGGCTTCGCTTCCTCCGGATCTGATGACAACGATGTAGTCATCATCGGCGGCGGTCCCGGCGGCTACGTCGCCGCCATCAAGGCTGCCCA GCTCGGTCTCAAGACCACCTGCATCGAGAAGCGTGGGACTCTCGGAGGCACCTGTCTCAACGTCGGCTGCATCCCTTCCAAGGCACTTCTCCACTCATCC CACATGTTCCATGAAGCACAACACACTTTCGCAAACCATGGTGTTAAGATTTCCTCTGTCGAGGTTGATTTGCCAGCCATGATGGGTCAAAAGGACAAAG CCGTAGCAAACCTTACAAAGGGTATTGAAGGTCTTTTCAAGAAGAACAAGGTGACCTACGTCAAAGGTTATGGCAAGTTCATCTCACCCAATGAAGTTTC CGTTGACACCATTGATGGTGGTAACACTGTCATTAAAGGCAAGCATATCCTTGTCGCCACCGGTTCTGATGTCAAGTCTCTGCCCGGAATCACCATCGAC GAGGAGAAAATAGTTTCGTCTACCGGTGCTCTAGCTTTGAAGAAAATCCCAAAGAAACTCATAGTCATCGGAGCAGGATACATCGGGCTCGAGATGGGGT CTGTCTGGTGCCGGCTCGGTTCAGAAGTCACTGTCGTGGAGTTTGCCCCAGATATCGTCCCGACTATGGATGGTGAGATTCGCAGGCAGTTTCAGCGGTC ATTGGAGAAGCAGAAGATGAAGTTCATGCTCAAGACTAAGGTGGTGTCAGTGGATAGCTCCGGCGATGGTGTCAAGCTAACACTAGAACCTGCCGCAGGT GGCGACCAGACAATTCTTGAGGCTGATGTTGTTCTAGTCTCTGCTGGCAGAACTCCATTCACAGCCGGTCTTGGACTGGACAAGATCGGCGTGGAAACCG ACAAGGGTGGTCGGATCTTGGTCAACGAAAAGTTCGAAACCAACGTGAAAGGTGTCTTTGCCATCGGAGATGTGATTCCGGGACCGATGTTGGCGCACAA GGCCGAAGAGGATGGAGTTGCTTGCGTCGAGTTTATAGCTGGGAAGCACGGCCATGTCGACTATGATAAGGTTCCGGGAGTTGTGTATACACACCCGGAG GTTGCATCGGTTGGAAAGACCGAGGAGCAGGTGAAGGCTAGCGGCGTTGCTTATCGTGTCGGGAAGTTCCCTTTCATGGCAAACAGCCGTGCTAAGGCGA TTGACAACGCGGAAGGACTAGTCAAGATATTGGCCGATAAGGAGACGGACAAGATCTTGGGAGTTCACATAATGGCACCAAATGCCGGGGAGTTGATTCA TGAGGCAGTATTGGCGATTAACTATGATGCTTCGAGTGAGGATATTGCCCGTGTATGCCACGCTCATCCGACGATGAGTGAGGCGTTGAAGGAGGCGGCC ATGGCCACCCATGACAAGCCCATTCACATTTGA
AA sequence Show only first row Show all	>Lus10017102 pacid=23167451 polypeptide=Lus10017102 locus=Lus10017102.g ID=Lus10017102.BGIv1.0 annot-version=v1.0 MAMASFARKKAYLLTRNFSNSNPDALRFSYSFTNFSRGFASSGSDDNDVVIIGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSS HMFHEAQHTFANHGVKISSVEVDLPAMMGQKDKAVANLTKGIEGLFKKNKVTYVKGYGKFISPNEVSVDTIDGGNTVIKGKHILVATGSDVKSLPGITID EEKIVSSTGALALKKIPKKLIVIGAGYIGLEMGSVWCRLGSEVTVVEFAPDIVPTMDGEIRRQFQRSLEKQKMKFMLKTKVVSVDSSGDGVKLTLEPAAG GDQTILEADVVLVSAGRTPFTAGLGLDKIGVETDKGGRILVNEKFETNVKGVFAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPE VASVGKTEEQVKASGVAYRVGKFPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA MATHDKPIHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	0	1
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	1.0	0.9419
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	2.0	0.8867
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	3.9	0.8351
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	4.5	0.8370
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020850 [exp]	6.7	0.8116
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	7.3	0.8319
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	7.3	0.8276
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10041823 [exp]	8.5	0.8284
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041278 [exp]	9.9	0.8245
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10043358 [exp]	10.5	0.7886

Compare expression of checked genes

Lus10017102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.