Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04850 516 / 0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G48690 193 / 7e-58 unknown protein AT2G01650 54 / 1e-07 PUX2 plant UBX domain-containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037827 [exp] 639 / 0 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10038183 [exp] 251 / 1e-74 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2) Lus10021798 [exp] 50 / 2e-06 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10034612 [exp] 50 / 2e-06 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10002262 [exp] 49 / 9e-06 AT5G35690 585 / 0.0 unknown protein Lus10000922 [exp] 44 / 0.0002 AT5G35690 575 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316400 [exp] 538 / 0 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.017G056900 [exp] 534 / 0 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.002G244500 [exp] 260 / 8e-84 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.008G133700 [exp] 50 / 3e-06 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1) Potri.014G160400 [exp] 44 / 0.0002 AT5G35690 440 / 2e-146 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09409 [flax] [poplar] PUB PUB domain
Representative CDS sequence Show only first row Show all	>Lus10017103 pacid=23167479 polypeptide=Lus10017103 locus=Lus10017103.g ID=Lus10017103.BGIv1.0 annot-version=v1.0 ATGGCAGGAGTTTCGCTCAAGTGCGGGGACTGCGGAGCCCTGTTGAAGTCCGTAGAGGAAGCTCAGGAGCACGCCGAGCTGACTTCTCACTCCAATTTCG CCGAGTCGACAGAGGCTGTACTAAATCTCGTTTGCACTGTTTGTGGAAAGCCCTGCCGATCGAAAACGGAAACCGATTTGCACACAAAGCGAACTGGTCA TACTGAGTTTGTGGACAAGACTGAAGAAGCTGCAAAACCTATAAGTTTAGAAGCACCAAAGGCTCCGATGGACGTGGATGAGCCGATTGGTACCAGCACT AGTGGGCAGCCTGAAGAAATGGTTGCTCCAGAAGTTGACGCAAAGCTCCTCGAAGAACTGGAAGGAATGGGTTTCTCAAAGGCACGGGCGACCAGGGCAC TTCATTTTACTGGTGAGATCATTGAATGGAAGTTATTAGCTACTGTTATGGTAATTGAGTCCGAGAGGGACTCAATCCCTTTCACTGTAAACCCTATAAG CAATAGCAGTGTCGAGGCTGCTGTGAACTGGGTAGTTGAGCATGAGAATGACCCAGACGTTGATGAGATGCCCCTGGTACCAGCTAACACCAAGGAGGAT GCTTCTAAGACTACTCTTACGCCAGAAGAAGTTAAACAGAAAGCTGCAGAATTGAGGGAGCGCGCTCGTAAAAAGAAAGAGGAAGAGGAGAAGAAGATGG AAAGAGAAAGGGAAAAGGAGAGGATCCGAGTTGGTAAGGAACTCTTGGAGGCCAAACGGATTGAAGAAGACAATGAAAGAAAACGTATAATTGCCTTGCG GAAGGCTGAGAAAGAAGAAGAGAGGAGGGCTAAGGAAAAGATTCGTCAGAAGCTGGAGGAAGATAAGGCAGAAAGAAGAAGGAAGCTTGGGTTACCCCCA CAAGATCCGGCCACTGCAGCACCTGCAGCGCCTGTTGAGGAAAAAAAGAGCTCATTACCTATCAGGCCAGCCACAAAGGCAGAACAAATGCGAGAATGTT TGAGAGCTATGAAGCAAACTTATAAGGATGAGGATGCTAAAGTGAAGAAGGCATTCCAGACTCTGTTAACGTACATAGGAAATGTAGCTAAAACTCCAAG CGAGGAGAAGTTCAGAAAAATTAGGCTGAGTAACCAAACTTTCCAGGATAGAGTTGGTTCTCTGGAAGGAGGGATCCAGCTGTTGGAGTTGTGCGGATTC GAGAAGATAGAAGGAGGTGAGTTCCTTTTCCTGCCAAGGGAAAAGGTGGAAATGGCTGTGCTCAACTCTGCCGGATCTGAGCTCAACTCTGCCATAAACA ACCCCTTCTTTGGAGTTCTCTAG
AA sequence Show only first row Show all	>Lus10017103 pacid=23167479 polypeptide=Lus10017103 locus=Lus10017103.g ID=Lus10017103.BGIv1.0 annot-version=v1.0 MAGVSLKCGDCGALLKSVEEAQEHAELTSHSNFAESTEAVLNLVCTVCGKPCRSKTETDLHTKRTGHTEFVDKTEEAAKPISLEAPKAPMDVDEPIGTST SGQPEEMVAPEVDAKLLEELEGMGFSKARATRALHFTGEIIEWKLLATVMVIESERDSIPFTVNPISNSSVEAAVNWVVEHENDPDVDEMPLVPANTKED ASKTTLTPEEVKQKAAELRERARKKKEEEEKKMEREREKERIRVGKELLEAKRIEEDNERKRIIALRKAEKEEERRAKEKIRQKLEEDKAERRRKLGLPP QDPATAAPAAPVEEKKSSLPIRPATKAEQMRECLRAMKQTYKDEDAKVKKAFQTLLTYIGNVAKTPSEEKFRKIRLSNQTFQDRVGSLEGGIQLLELCGF EKIEGGEFLFLPREKVEMAVLNSAGSELNSAINNPFFGVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	0	1
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	2.0	0.9351
AT5G10750			Protein of unknown function (D...		Lus10026242 [exp]	3.2	0.9342
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	3.9	0.9315
AT2G21190			ER lumen protein retaining rec...		Lus10012176 [exp]	4.6	0.9196
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	4.9	0.9199
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	6.0	0.9312
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	6.7	0.9275
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10003539 [exp]	9.8	0.8992
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	10.1	0.9105
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	12.0	0.9105

Compare expression of checked genes

Lus10017103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.