Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13730 523 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 512 / 4e-180 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 103 / 7e-24 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G28550 92 / 6e-20 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 87 / 3e-18 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G27100 73 / 1e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 70 / 1e-12 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 67 / 1e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 66 / 3e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 64 / 9e-11 RabGAP/TBC domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037829 [exp] 684 / 0 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10008148 [exp] 100 / 2e-22 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022905 [exp] 94 / 3e-20 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 91 / 2e-19 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 84 / 4e-17 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 82 / 5e-17 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10011159 [exp] 76 / 2e-14 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10043064 [exp] 74 / 7e-14 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10004802 [exp] 69 / 3e-12 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057100 [exp] 578 / 0 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 573 / 0 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G131300 [exp] 384 / 7e-130 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.006G069300 [exp] 370 / 2e-124 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 105 / 2e-24 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.005G227400 [exp] 94 / 1e-20 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G419100 [exp] 77 / 5e-15 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 75 / 3e-14 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.018G127500 [exp] 71 / 6e-13 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.017G023200 [exp] 70 / 2e-12 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10017104 pacid=23167405 polypeptide=Lus10017104 locus=Lus10017104.g ID=Lus10017104.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAGAACGTGCCTGATTGGCTTAACAGCTCTCTTTGGTCCACTGCTCCTTCCTCTCCTTCCTCCGACGATCTCTCCCAACCCCACCCTTCCT CCTCCTCCGCCAATTCCATCTCGGCAGCCATTTTCCCCTCTCCGATGACCAGCGATGCTAATTTTCAGCCTCCGATCCTCGACCGACCTACGAGGGAAGA ACAACCGCCGCCTCGTTCGCAGAAACCAGAGATTAAGGATAAGAATTCCAAGAGTATTATTAGTACTAATTCTAATAGCAGTAGCAATAGCAGTATTCAT ATAGATGAAGATCGCGATGACGAGAATGTCGCCTCTGCTGCTGGCCCTTCGGCGGAGGATATAACGAAGCAGGCTAAGTTATCGACCGAGTTGTCGAAGA AGGTGGTGAATTTGAAAGAATTGAGGAAGATTGCTTCCCAGGGTTTACCTGATGGTGCTGGCATTCGTTCCACGGTTTGGAAGCTTTTGTTGGGATATTT ACCTCCCGAGCGTTCCCAATGGTCGTCTGAATTGGCTAAGAAAAGGCCCCAATACAAGAATTTCAAAGATGAGCTACTGATGAATCCTTCAGAAATCACA AGGAAGTTGGAGAAGTCCATTGACGAGGGTTCAAAGCTTGAAAATTGCTGTATGCTCTCAAGATCAGAAATCAATCATGATGAACATCCTTTGAGCCTTG GGAAAACCAGCATCTGGAATAAATACTTCCAGGACTCCGAGATTATAGAGCAAATTGACCGAGATGTCAAGCGTACTCATCCAGATCTGCATTTCTTCTG CGGAGATTCATCGTTTGCAAAATCAAATCAGGAATCTTTGAAAAGCATATTAATTGTATTTGCCAAGTTAAATCCTGGCATCAGATATGTCCAAGGGATG AATGAGATTGTGGCCCCTCTATACTACGTATTCAAAAATGACCCAGATGAGGAAATGACTTCATGTGCAGAAGCAGACACATTCTTTTGTTTTGTTGAGC TATTAAGTGGATTCCGTGACAATTTCTGCCAGCAGCTGGACAATAGTGTTGTTGGAATCCGTTCAACAATTACAAAGCTGTCACAGCTTTTGAAAGAAAA TGATGAAGAACTTTGGCGCAACCTCGAGATCACACCCAGTATTGGATGTTTGGTTGGGATGATGGAACAGGTGAACCCGCAATTCTACGCATTTAGGTGG ATCACACTCCTGTTGACGCAAGAATTCAACTTTGCAGATAGTCTTCATATTTGGGACACGCTCCTCAGCGACCCTCAGGGTCCCCAGGAGACTTTACTTA GGATTTGTTGTGCGATGCTAATACTGATACGAAGGAGGCTCCTAGCAGGGGATTTCACATCTATTCTGAAACTTCTGCAGAACTACCCACCCACAAACAT CAGCCATTTGCTTTACGTTGCAAACAAATTGCGCCCTCCTCTTCCCTCTTGCTGA
AA sequence Show only first row Show all	>Lus10017104 pacid=23167405 polypeptide=Lus10017104 locus=Lus10017104.g ID=Lus10017104.BGIv1.0 annot-version=v1.0 MVKKNVPDWLNSSLWSTAPSSPSSDDLSQPHPSSSSANSISAAIFPSPMTSDANFQPPILDRPTREEQPPPRSQKPEIKDKNSKSIISTNSNSSSNSSIH IDEDRDDENVASAAGPSAEDITKQAKLSTELSKKVVNLKELRKIASQGLPDGAGIRSTVWKLLLGYLPPERSQWSSELAKKRPQYKNFKDELLMNPSEIT RKLEKSIDEGSKLENCCMLSRSEINHDEHPLSLGKTSIWNKYFQDSEIIEQIDRDVKRTHPDLHFFCGDSSFAKSNQESLKSILIVFAKLNPGIRYVQGM NEIVAPLYYVFKNDPDEEMTSCAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITKLSQLLKENDEELWRNLEITPSIGCLVGMMEQVNPQFYAFRW ITLLLTQEFNFADSLHIWDTLLSDPQGPQETLLRICCAMLILIRRRLLAGDFTSILKLLQNYPPTNISHLLYVANKLRPPLPSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10017104 [exp]	0	1
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10028714 [exp]	5.7	0.6751
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	14.5	0.7409
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	17.9	0.6773
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10038006 [exp]	18.0	0.7233
					Lus10032730 [exp]	19.5	0.6697
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	21.0	0.7202
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	23.4	0.7404
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10009675 [exp]	32.4	0.7027
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	36.6	0.7078
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	38.7	0.6581

Compare expression of checked genes

Lus10017104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.