Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04910 766 / 0 O-fucosyltransferase family protein (.1) AT1G14020 277 / 1e-85 O-fucosyltransferase family protein (.1) AT2G03280 276 / 2e-85 O-fucosyltransferase family protein (.1.2) AT5G35570 280 / 5e-85 O-fucosyltransferase family protein (.1) AT1G22460 277 / 5e-85 O-fucosyltransferase family protein (.1) AT5G15740 273 / 4e-84 RRT1 O-fucosyltransferase family protein (.1) AT5G01100 275 / 1e-83 O-fucosyltransferase family protein (.1) AT4G24530 271 / 4e-83 O-fucosyltransferase family protein (.1) AT3G02250 268 / 3e-82 O-fucosyltransferase family protein (.1) AT2G37980 271 / 5e-82 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037830 [exp] 885 / 0 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10032603 [exp] 789 / 0 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10037831 [exp] 409 / 7e-138 AT4G13750 149 / 7e-39 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10030093 [exp] 402 / 2e-135 AT1G04910 384 / 2e-130 O-fucosyltransferase family protein (.1) Lus10022572 [exp] 348 / 5e-116 AT4G13750 95 / 2e-21 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016661 [exp] 357 / 2e-107 AT4G13750 2109 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10026624 [exp] 292 / 3e-91 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 285 / 2e-88 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 284 / 3e-88 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057300 [exp] 790 / 0 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 784 / 0 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 281 / 2e-87 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 280 / 1e-86 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 279 / 2e-85 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 277 / 2e-85 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 277 / 4e-85 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 275 / 1e-84 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 278 / 2e-84 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 271 / 3e-83 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017105 pacid=23167438 polypeptide=Lus10017105 locus=Lus10017105.g ID=Lus10017105.BGIv1.0 annot-version=v1.0 ATGTGGTCTCTCTACCCTCCACCTTCAAGACAAAACTGTGAATCCCTGCAAACAGATATTGTTTCTATGGCAACGGACCTTACAAAATCGAACACAGTCT CTTCGACAGTAGAAAATGGGTCCAAATCATTGAAGTACCAGATGAAAGCCAGATCGAATTGGCCTCCTGCAGAATGGAAGACAGCACCTGGTTATGGTCC TCATGCAGCAGGTAACACCAGAATTAAAACGCTGAGCATTGAGAAGGATGCTGACATGATACTGACAGAAGGAGAGGTACCTATCGTTAGCGATGGCGAC TGGACCATCAGAGATGATCCAGGCTGTGAAACTGCCAATGACTATCTCAGTCTTGCGTATAATCAAACGGGTGGTATGGATGGGACAGTTGATCCTGCAC ACTCTGAGATGATGCCAGATCAAGCTCAGCGGCGCTCGTTGGGATTTGGCAGGAGAGACCAGTTTGCTATAACTGGTGGTTCCAATGACCAAGCGATGGC AACAGGAAGATCGGGGGAGCGGATTGCTTTCAGATACTTGACGGGGAAATACGGTGAAGAAGGTGGGAGGTGGGTTAATGAAGCACAGGAGACTGTTCTA CCGTATGACATGCTGGTGGTGAAAGAGCATGAGCATGCTCCTCCGAAAGAGACTAATGGATATCTGCGAGTTCGTTGTAATGGTGGGCTGAATCAGCAGA GGAGTGCGATCTGCAATGCCGTTCTTGCTGCCAGAATTATGAATGCTACACTTGTGCTTCCTGAATTAGATGCAAACTCATTTTGGCATGATGACAGTGG GTTCCATGGAATTTACGACGTTGAGCATTTTATTCAGTCACTGAGGTACGACGTACGGATTGTAGAAAGCATTCCAGAAATCCACAAAAATGGAAAAACG AAGAAGATAAAGGCCTTCCAGCTACGCCCTGAACGAGATGCACCTATTAGTTGGTACACAACAGAGGCACTGCAGAAAATGAAGCAACATGGAGCGATAT ATTTAACTCCTTTTTCACACCGTTTAGCTGAGGAAATTGACAACCCCGAGTACCAGCGACTCAGATGCAGGGTTAACTATCATGCTTTGAGATTTAAATC TCATATTATGAAGTTGAGTGAATCAATAGTTGAGAAACTACGCACAGAAGGTCACTTCATGGCAATACACCTTCGATTTGAGATGGACATGCTCGCATTT GCAGGGTGCTTTGACATATTCAGTCCCAAAGAACAAGTACTATTGAAGAAGTATCGTGAGGCAAATTTTGCAAAGAAGAAGCTGGTGTATAATGAAAGGA GGGCGATTGGAAAGTGCCCACTTACTCCAGAAGAGGTTGGACTTATCCTACGAGCTACGGGGTTTGACAATTCAACCAGAATATATTTAGCCGCTGGTGA ATTGTTTGGGGGAGAACGATTTATGAAGCCTTTCAGGTCTCTGTTTCCCCGTCTTGAAAATCACAGTTCTGTAGATGTTTCAGAGGAGCTGAGTGGAAAC AGCCAGGGATTACTGGGTTCTGCAGTAGATTACATGGTTTGTCTTCTTGCTGACATCTTCATGCCAACATATGATGGACCAAGTAACTTTGCCAACAATC TCCTGGGGCATCGTCTTTATTATGGATTTAGAACAACAGTTAGACCCGACAGGAAGGCACTCGCCCCAGTTTTTATTGATAGGGAGAACGGGAAGACAGC TGGGTTCGAAGCAGCAGTTAGACGTGCGATGCAGAAAACCAACTTCGGTGGTCCTCATGTACGGATATCTCCAGAGTCATTTTATACAAACTCTTGGCCG GAGTGTTTCTGTCAATCGGAACCTAAAAACCCTGCTGATAAGTGCCCGCCGGACAATGTCCTGCAAATTCTGAATAACCAGCTAGAAAGCCAGATGGCAA GTGACTTAGAGCCTCATTTGCAGGACAATGCAACTTTGTCGTTGGAAAGATAG
AA sequence Show only first row Show all	>Lus10017105 pacid=23167438 polypeptide=Lus10017105 locus=Lus10017105.g ID=Lus10017105.BGIv1.0 annot-version=v1.0 MWSLYPPPSRQNCESLQTDIVSMATDLTKSNTVSSTVENGSKSLKYQMKARSNWPPAEWKTAPGYGPHAAGNTRIKTLSIEKDADMILTEGEVPIVSDGD WTIRDDPGCETANDYLSLAYNQTGGMDGTVDPAHSEMMPDQAQRRSLGFGRRDQFAITGGSNDQAMATGRSGERIAFRYLTGKYGEEGGRWVNEAQETVL PYDMLVVKEHEHAPPKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFHGIYDVEHFIQSLRYDVRIVESIPEIHKNGKT KKIKAFQLRPERDAPISWYTTEALQKMKQHGAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKSHIMKLSESIVEKLRTEGHFMAIHLRFEMDMLAF AGCFDIFSPKEQVLLKKYREANFAKKKLVYNERRAIGKCPLTPEEVGLILRATGFDNSTRIYLAAGELFGGERFMKPFRSLFPRLENHSSVDVSEELSGN SQGLLGSAVDYMVCLLADIFMPTYDGPSNFANNLLGHRLYYGFRTTVRPDRKALAPVFIDRENGKTAGFEAAVRRAMQKTNFGGPHVRISPESFYTNSWP ECFCQSEPKNPADKCPPDNVLQILNNQLESQMASDLEPHLQDNATLSLER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	0	1
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10009311 [exp]	2.2	0.8612
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10006196 [exp]	5.3	0.8181
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013106 [exp]	6.9	0.8163
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	7.9	0.8496
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	9.6	0.8486
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	10.7	0.8564
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10019695 [exp]	11.5	0.8441
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10035727 [exp]	12.2	0.8023
AT5G50970			transducin family protein / WD...		Lus10032536 [exp]	12.5	0.7957
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	13.4	0.8455

Compare expression of checked genes

Lus10017105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.