Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48040 414 / 3e-144 Protein phosphatase 2C family protein (.1) AT3G62260 404 / 3e-140 Protein phosphatase 2C family protein (.1.2) AT3G17250 377 / 6e-129 Protein phosphatase 2C family protein (.1) AT2G33700 300 / 3e-99 Protein phosphatase 2C family protein (.1) AT3G51470 298 / 8e-99 Protein phosphatase 2C family protein (.1) AT2G25620 249 / 2e-79 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT5G24940 153 / 4e-42 Protein phosphatase 2C family protein (.1) AT5G10740 147 / 7e-41 Protein phosphatase 2C family protein (.1) AT4G31750 146 / 7e-41 WIN2 HOPW1-1-interacting 2 (.1) AT2G25070 142 / 6e-39 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037832 [exp] 733 / 0 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1) Lus10038058 [exp] 362 / 7e-124 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10009993 [exp] 361 / 3e-123 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10013213 [exp] 310 / 4e-103 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 308 / 1e-102 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 296 / 2e-97 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 288 / 4e-94 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10001682 [exp] 261 / 3e-84 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 251 / 3e-80 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G151500 [exp] 543 / 0 AT1G48040 418 / 8e-146 Protein phosphatase 2C family protein (.1) Potri.008G100700 [exp] 511 / 0 AT1G48040 376 / 5e-129 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 424 / 4e-148 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 359 / 2e-122 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2) Potri.005G253700 [exp] 309 / 9e-103 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 308 / 1e-102 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 303 / 9e-101 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 299 / 5e-99 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.006G059600 [exp] 276 / 4e-90 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 264 / 9e-86 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10017106 pacid=23167408 polypeptide=Lus10017106 locus=Lus10017106.g ID=Lus10017106.BGIv1.0 annot-version=v1.0 ATGGTGGCCGAGACCGAAATAATCTGTCAGCAGCGCATAGCTTCTGTTCTTGACGTTCAATTCTTGAAGGTCGATGTCTCTTCTCCTTCCTCTCCGATCT TGGAATCCGTCTCCGCTGAAGTTACCCGCTTTGAATCGGTTGTCAATTTCTCTGACCCTCACACCCCTAAAGACATTATGATTGATCCCTCTGCAATGAA GCCATTTCCAAATCTCCGATCCGGCAGCTATTCCGATATCGGACCGAGGCCATCCATGGACGACGAGCACATTCGAATTGACGACCTCTCCGCCCACCTC GGCTCTTTCTTTAGCTGCCCTAGTGCTTTTTACGCAGTGTTTGATGGCCATGGTGGGCCTGATGCTGCTGCTTACATCAAGAGGAATGCCATGAAGTTAT TCTTTGATGATGCAGATCTGCCCGAAACTTCTGATCATATGGATGCATTCTTCTTGGAATCCCTGATGGATTCCCACCGAAAAGCCTTCCTACTAGCAGA CATCGCCATTGCTGATGAAAGCACCATCCGCAGCTCATGTGGTACCACCGCCCTGACCGCCCTAGTTCTCGGCAGGCACTTACTGGTTGCAAATGCTGGA GACTGCAGAGCTGTTCTATGCAGGAAAGGAGCAGCATTTGATATGTCACAAGACCACCGACCTTCCTACTTACCTGAACGCAGACGAGTCGAAGAGTTGG GTGGCCGAATTGAAGATGAATACCTCAACGGCTACCTCTCAGTGACTCGGGCCCTCGGTGACTGGGATCTGAAACTTCCATACGGTTCCGAATCACCTCT CATTGCCGAGCCAGAGGTTCGACAAATTACTTTATCTGATGATGACGAATTCTTGATAATTGGTTGCGATGGCATCTGGGATGTGATGTCAAGCCAGTAC GCTGTAAGCCTTGTCCGACGGGGGCTAAGAAGGCATAACGATCCAGAGCTCAGTGCAAGAGAGCTAGTAAATGAAGCGGGAAGGCTCCATTCAAGTGATA ATCTCACTGTTGTGGTGATTTGCTTCTCTACTCCAAGACCTATTGAGACTTGCCCTCCACAGAGGAGGAGATTCAGATGCTTTAGCTTGTCGGAGGAGGC ACGGAGTAGGCTGAAGGGTTTGATGGAAGGCAACTGA
AA sequence Show only first row Show all	>Lus10017106 pacid=23167408 polypeptide=Lus10017106 locus=Lus10017106.g ID=Lus10017106.BGIv1.0 annot-version=v1.0 MVAETEIICQQRIASVLDVQFLKVDVSSPSSPILESVSAEVTRFESVVNFSDPHTPKDIMIDPSAMKPFPNLRSGSYSDIGPRPSMDDEHIRIDDLSAHL GSFFSCPSAFYAVFDGHGGPDAAAYIKRNAMKLFFDDADLPETSDHMDAFFLESLMDSHRKAFLLADIAIADESTIRSSCGTTALTALVLGRHLLVANAG DCRAVLCRKGAAFDMSQDHRPSYLPERRRVEELGGRIEDEYLNGYLSVTRALGDWDLKLPYGSESPLIAEPEVRQITLSDDDEFLIIGCDGIWDVMSSQY AVSLVRRGLRRHNDPELSARELVNEAGRLHSSDNLTVVVICFSTPRPIETCPPQRRRFRCFSLSEEARSRLKGLMEGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48040			Protein phosphatase 2C family ...		Lus10017106 [exp]	0	1
AT4G02720			unknown protein		Lus10042601 [exp]	2.6	0.8626
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	6.8	0.8464
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	8.1	0.8346
AT3G46450			SEC14 cytosolic factor family ...		Lus10004953 [exp]	9.4	0.7868
AT5G13970			unknown protein		Lus10035116 [exp]	10.0	0.7985
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	16.6	0.8088
AT4G02720			unknown protein		Lus10022052 [exp]	21.7	0.7923
AT5G49610			F-box family protein (.1)		Lus10037802 [exp]	21.9	0.7630
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10028319 [exp]	23.9	0.7795
AT3G18310			unknown protein		Lus10023992 [exp]	28.0	0.7791

Compare expression of checked genes

Lus10017106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.