Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48090 184 / 1e-54 calcium-dependent lipid-binding family protein (.1) AT4G17140 117 / 2e-31 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) AT5G24740 72 / 2e-15 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037833 [exp] 145 / 6e-41 AT1G48090 2202 / 0.0 calcium-dependent lipid-binding family protein (.1) Lus10003007 [exp] 108 / 4e-28 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10011036 [exp] 108 / 5e-28 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10003835 [exp] 58 / 2e-10 AT5G24740 1701 / 0.0 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100600 [exp] 185 / 4e-55 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1) Potri.001G148800 [exp] 108 / 5e-28 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Potri.001G455600 [exp] 56 / 1e-09 AT5G24740 3006 / 0.0 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017108 pacid=23167458 polypeptide=Lus10017108 locus=Lus10017108.g ID=Lus10017108.BGIv1.0 annot-version=v1.0 ATGTCAGAGCAGTGGAAAAAGAACAAGAGGGTTGAGTTTATCAATCTCAAACATGGTGAGATGAAGGTCCTCCATTTGCTTCGAAGATATTTGGGGGAAT ATGTTCATGGCCTGTCATCAGAGGCTTTACGTATAAGTGTTTGGAAGGGTGATGTGGTCCTCAAAGACTTGAAACTGAAGGCTGAGGCGTTAAATTCACT CAATCTTCCAGTCACTGTAAAAGCTGGTTTTATCGGAACCATAACACTAAAGGTTCCCTGGAAAAGCTTAGGCAAGGAGCCTGTTATTGTTCTTGTTGAC CGAGTCTTTGTTCTTGCTCATCCTGCACCGGATGACCGAACTCTCAAGGAGGAGGACAGGATAAAACTATTCGAAGCAAAACTTCAACAGATTGAGTGTG CTGAGATTGAGCACACTTTTCTCGACTAG
AA sequence Show only first row Show all	>Lus10017108 pacid=23167458 polypeptide=Lus10017108 locus=Lus10017108.g ID=Lus10017108.BGIv1.0 annot-version=v1.0 MSEQWKKNKRVEFINLKHGEMKVLHLLRRYLGEYVHGLSSEALRISVWKGDVVLKDLKLKAEALNSLNLPVTVKAGFIGTITLKVPWKSLGKEPVIVLVD RVFVLAHPAPDDRTLKEEDRIKLFEAKLQQIECAEIEHTFLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48090			calcium-dependent lipid-bindin...		Lus10017108 [exp]	0	1
AT1G58230			binding (.1)		Lus10042867 [exp]	1.4	0.9812
AT1G48090			calcium-dependent lipid-bindin...		Lus10037833 [exp]	2.4	0.9778
AT2G46560			transducin family protein / WD...		Lus10005975 [exp]	3.0	0.9736
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	4.5	0.9680
AT1G58230			binding (.1)		Lus10028167 [exp]	6.0	0.9691
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	7.3	0.9634
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10009204 [exp]	7.7	0.9674
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	8.9	0.9664
AT1G48090			calcium-dependent lipid-bindin...		Lus10017107 [exp]	9.8	0.9571
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	10.4	0.9606

Compare expression of checked genes

Lus10017108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.