Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48100 614 / 0 Pectin lyase-like superfamily protein (.1) AT1G02460 502 / 1e-175 Pectin lyase-like superfamily protein (.1) AT1G56710 467 / 8e-163 Pectin lyase-like superfamily protein (.1) AT4G01890 455 / 1e-157 Pectin lyase-like superfamily protein (.1) AT5G14650 344 / 2e-114 Pectin lyase-like superfamily protein (.1) AT1G60590 333 / 5e-109 Pectin lyase-like superfamily protein (.1) AT1G10640 331 / 4e-108 Pectin lyase-like superfamily protein (.1) AT3G26610 306 / 2e-99 Pectin lyase-like superfamily protein (.1) AT1G23460 297 / 7e-96 Pectin lyase-like superfamily protein (.1) AT1G70500 290 / 3e-93 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037834 [exp] 823 / 0 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 494 / 2e-172 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 491 / 2e-171 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 357 / 3e-118 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 354 / 5e-117 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 345 / 2e-113 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 334 / 7e-110 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 310 / 2e-100 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 280 / 1e-89 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152000 [exp] 643 / 0 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 632 / 0 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 528 / 0 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 525 / 0 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 511 / 3e-179 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 508 / 2e-178 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 353 / 2e-117 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 345 / 5e-114 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 333 / 4e-109 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 303 / 4e-98 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10017109 pacid=23167429 polypeptide=Lus10017109 locus=Lus10017109.g ID=Lus10017109.BGIv1.0 annot-version=v1.0 ATGGAGATCGTCATTCCTCGCCGTGCTCTTCTGCTAACTTTGGTACTAGTAGCAATGGCGCCCGTTGTTGTACAAGGAAGGCACACTTTCCACAAGGCCA AAAAGGGCAAGCATATTCCACCTAATTCCCCTGTTCCTTCTCCAGAGTATAATAATAATCCTCCTCCTCCACCTCCCTCTCTGGTTCCGTCCGACCCGTA CCCAACCGACCCGCCCGGGGACTCGGATGACTGCATTTTCGACGTCAGGTCTTACGGTGCTGTCGGGGATGGGTCCACTGACGATACGGCCGCATTTAGA GCCGCTTGGAAAGATGCCTGCGGTGTTGAGTCGGCTACTGTGCTTGCTCCTTCCGGGTTTAGCTTCGTGATCACCTCCACCATTTTCAACGGTCCTTGCA AGCCTGGTCTCGTTCTTAAGATAGATGGGTGCCTAATGCCGCCGGACGGGCCGGATGCGTGGCCGGACGGCGACAGCAAGCAGCAGTGGTTAGTGTTTTA TAGGCTAAACGACATGACGCTCACGGGAGAAGGAACCATCGAAGGCAACGGCGACAAGTGGTGGGATCTCCCCTGCAAGCCTCATCGGGGAATGGACGGA ACGGCGTCGTCTGACGGGTGTGAGAGCCCAACTTTAATCCGGTTCTTCATGAGCTCGAATTTGGTGGTGAGCGGGATAAGGATCCAGAACAGCCCGATGT TCCACATGAAGTTCGACGGGTGCGACGGAGTGTTGATAGAGAAGATACAAATCTCTTCGCCGAAGCTCAGCCCGAACACAGACGGGATCCACATCGGGAA CACGAACAACGTCGGAATATACAACTCCATGATCAGCAACGGGGACGATTGCGTATCAATTGGGACCGGAACGTCGAATATCGACATAGAGGGTCTCACT TGCGGGCCTAGTCACGGGATCAGCATCGGGAGCTTAGGAGTGCACAACTCAAAGGCATGCGTGTACAACATAACAGCTCGGAACCTCCTAATCCGCGAAT CGGACAATGGGGTCCGGATCAAGACATGGCAGGGCGGGTCAGGATCGGTATCCGGGATATCGTTTGAGAACATCCAGATGGAGAACGTCCGGAACTGCAT CAACATCGACCAGTACTACTGCAACTCGAAGTCGTGCGAGAACCAGACGTCCGCAGTGTACGTGAACGACATCTCCTTCCGCAACATCAAGGGAACCTAC GACGTCCGGACCCCGCCGGTCCACTTCGCCTGCAGCGACACCGTGGCGTGCACAAACATCACGTTGTCCGAGGTCGAGCTACTCCCTCACGAGGGAGAAT TGCTCGACGACCCCTTCTGTTGGAACGCGTACGGGACCCAGGAGACCGTGACCATCCCTCCGATCGACTGCCTCAACGACGGGGTCCCTCAGAACGTGGA AGAGCTCTCTGCCTATGCTTGCTGA
AA sequence Show only first row Show all	>Lus10017109 pacid=23167429 polypeptide=Lus10017109 locus=Lus10017109.g ID=Lus10017109.BGIv1.0 annot-version=v1.0 MEIVIPRRALLLTLVLVAMAPVVVQGRHTFHKAKKGKHIPPNSPVPSPEYNNNPPPPPPSLVPSDPYPTDPPGDSDDCIFDVRSYGAVGDGSTDDTAAFR AAWKDACGVESATVLAPSGFSFVITSTIFNGPCKPGLVLKIDGCLMPPDGPDAWPDGDSKQQWLVFYRLNDMTLTGEGTIEGNGDKWWDLPCKPHRGMDG TASSDGCESPTLIRFFMSSNLVVSGIRIQNSPMFHMKFDGCDGVLIEKIQISSPKLSPNTDGIHIGNTNNVGIYNSMISNGDDCVSIGTGTSNIDIEGLT CGPSHGISIGSLGVHNSKACVYNITARNLLIRESDNGVRIKTWQGGSGSVSGISFENIQMENVRNCINIDQYYCNSKSCENQTSAVYVNDISFRNIKGTY DVRTPPVHFACSDTVACTNITLSEVELLPHEGELLDDPFCWNAYGTQETVTIPPIDCLNDGVPQNVEELSAYAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	0	1
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	1.4	0.9246
AT5G09760			Plant invertase/pectin methyle...		Lus10005587 [exp]	3.0	0.8666
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10004496 [exp]	5.5	0.8805
AT1G22490	bHLH	bHLH094	basic helix-loop-helix (bHLH) ...		Lus10000332 [exp]	5.7	0.8601
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	5.7	0.8458
AT1G65900			unknown protein		Lus10020799 [exp]	5.9	0.8565
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	7.1	0.8471
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	7.7	0.8449
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10029905 [exp]	11.0	0.8274
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040264 [exp]	25.2	0.7791

Compare expression of checked genes

Lus10017109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.