Plant FIBer expression Database

Lus10017110 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17300 156 / 4e-50 EMB2786 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037835
[exp]
186 / 7e-62 AT3G17300 156 / 1e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G152100
[exp]
164 / 2e-53 AT3G17300 156 / 2e-51 unknown protein
Potri.008G100400
[exp]
160 / 1e-51 AT3G17300 151 / 2e-49 unknown protein
PFAM info
Representative CDS sequence
>Lus10017110 pacid=23167441 polypeptide=Lus10017110 locus=Lus10017110.g ID=Lus10017110.BGIv1.0 annot-version=v1.0
ATGATAGCGGACTCATGGTCATGCACCAAGACGGCGGTGTATTATCAGCAGGCAAATCTTCAACGGGTGACGCGATCACCATCGATCAATCCTCCAAATC
AAAGGACAACGAGCGGACTGCCCTTCGGACTTCTCCAATCTAACAGTGATAGCCTTGCTGAGAAGTTCAGCTCCTCATTTCTTAGAAATTGGGAAAAGAA
ATCGGGAAACAAAGAAACAATGCCGTCTCTGCAAACTGCATTGCCCCCTGAATTGGCCAACAATGCTATCCGATTGTACCGGGAATGTCTTCGAAGAGCT
AAGTACGTCGGTCATCAGCAACACAACACAGCTTTGTTGGTTGATATGGTGAGGCAGCAGTTCAAAAGGCACAAGAACGAGACCGACGCTGACAAGATAC
AGAAGTTAAAGGACGATGCGGCGAGAGGGCTTATAAACCACATGCTCTACGAATCTGAGAAGCCGTCTGGTCGTAAGTTCAGCAAGAGGTCCTCTTAA
AA sequence
>Lus10017110 pacid=23167441 polypeptide=Lus10017110 locus=Lus10017110.g ID=Lus10017110.BGIv1.0 annot-version=v1.0
MIADSWSCTKTAVYYQQANLQRVTRSPSINPPNQRTTSGLPFGLLQSNSDSLAEKFSSSFLRNWEKKSGNKETMPSLQTALPPELANNAIRLYRECLRRA
KYVGHQQHNTALLVDMVRQQFKRHKNETDADKIQKLKDDAARGLINHMLYESEKPSGRKFSKRSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G17300 EMB2786 unknown protein Lus10017110
[exp]
0 1
AT5G23535 KOW domain-containing protein ... Lus10042614
[exp]
2.4 0.9287
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Lus10035650
[exp]
4.8 0.9341
AT5G23740 RPS11-BETA ribosomal protein S11-beta (.1... Lus10001681
[exp]
9.6 0.9295
AT3G61140 EMB78, CSN1, CO... EMBRYO DEFECTIVE 78, COP9 SIGN... Lus10036566
[exp]
12.6 0.9245
AT5G05670 signal recognition particle bi... Lus10029130
[exp]
13.3 0.8889
AT1G04850 ubiquitin-associated (UBA)/TS-... Lus10037827
[exp]
13.7 0.9161
AT3G01280 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE D... Lus10007267
[exp]
15.0 0.9209
AT4G21105 cytochrome-c oxidases;electron... Lus10006275
[exp]
17.5 0.9225
AT1G33110 MATE efflux family protein (.1... Lus10013626
[exp]
18.4 0.9055
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10015106
[exp]
18.5 0.9223

Lus10017110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.