Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48110 583 / 0 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G17330 500 / 5e-170 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G79270 291 / 8e-90 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G13060 291 / 6e-89 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT3G13460 287 / 6e-87 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT5G61020 268 / 9e-82 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G55500 269 / 1e-81 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT5G58190 258 / 9e-78 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G27960 254 / 8e-76 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT3G03950 250 / 1e-75 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018343 [exp] 1180 / 0 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10034792 [exp] 294 / 5e-90 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 293 / 2e-89 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10035790 [exp] 290 / 1e-84 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037364 [exp] 275 / 2e-83 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10027582 [exp] 271 / 2e-81 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10002624 [exp] 267 / 2e-80 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 270 / 3e-80 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10037028 [exp] 265 / 3e-79 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152300 [exp] 758 / 0 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G100200 [exp] 700 / 0 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G080800 [exp] 328 / 2e-103 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.010G175500 [exp] 313 / 2e-97 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.014G001000 [exp] 297 / 7e-91 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.007G002800 [exp] 295 / 9e-90 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.004G223800 [exp] 281 / 1e-85 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.001G056100 [exp] 281 / 2e-85 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.006G079900 [exp] 280 / 2e-84 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.003G008400 [exp] 277 / 5e-84 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10017111 pacid=23167446 polypeptide=Lus10017111 locus=Lus10017111.g ID=Lus10017111.BGIv1.0 annot-version=v1.0 ATGGAAATGTATAATGTTTCTGGTAATCCGAACACAGAAAATTACATGGTATTTTCTTACTGCTCCCTGACTGCTATTCAGCAAACTGCAATAGATCCAA ACTTGAGTACTCCAGTGTTTGAACAAGTTCAAGCTATGTACAACGCAGGAGCCCCTGAGTTTGTTGTTGATCAGGGAATGTATTATCCTACTGCCACCAA CTATGGTTATTACTGTACAGGTTTTGAGACACCCGGTGAATGGGAGGACCACCACGGCATTTTTGGTGTAGATGGTCCAGAAGTCCAGTATGCGGGTGCA CAAACTGAAAATTTACCTTATGCTTATTATACACCTAGCTATGGATATGCACAGTCTTCTTACAATCCATACAATCCTTACATACCCGGGGCTATGATGG GTGTGGATGACACATATGTAGGGGCCCAACAATACTATGCTCTTCCACCTTATCAGGACTCCATGTCTGCAGCGGGTTATATTCCCTATGTTGTTCAACA AGACATGGTTCCAAGCAATTTAGTCGAGCAACTTCCTGATGCTGGTATTATATATGGTGATGAACAAGGTGGAAGAACTTCTAAACAAGGTCCAACATCT GCAGCCTATTCTAGGAATCCTTCTAAATCCTCTGCAAATCTGAACCAGTCTTTGTCAAGGACTTCTGAGGGGCCTAAGCCTAACGTTGGGAGTAGCAAAT ATTCTGTTGTCCATGAAAATGCTTCTTCTGGTAGATTTCAGGCACCAGCATCACGTGTGCTTCAGGGAAGAAATGCATCTGGAACCGCCCATGCTGTTGA CAACACAGTAAAGGTGAAAGCTCCACCTCTGCGTGACCAACTGAAATTTGCTCTGCCTGTTAACAATGGCATCACTGATTTTGGGTCAGAGTCACACCTC AGACCATTCGATAAGCATCGATCAAATATTCAGGCTGGCAGAACTTTCAATGATGTAGACGGGTGTCAAGAAGCATTGGGTGAGCAGAATCGTGGACCTA GAACGACCAGATCGGAAAACCAATTAGCTGTTAAATCATACACGACTAGGACTGGTGGTTCTAATGCAGAGGGGAACATTATCATACATACGGATCGATA CAACAGAGATGATTTCCAAATTGATTTCGCTTTTGCAAAATTCTTTGTAATCAAATCATATAGCGAGGATGATGTTCACAAGAGCATTAAATACAATGTT TGGTCCTCAACGCTACACGGAAACAAAAAGCTGCAGAGTGCCTATGAAGATGCTCAGAAGATAGCTGCAGAGAAAGTTACCAGTTGCCCTGTTTTCCTTT TCTTTTCTGTTAATGCAAGTGGACAGTTTTGTGGTGTTGCTGAGATGATTGGTCCAGTTGATTTAAAGAAGGATATGGATTTTTGGCAGCAAGATAAATG GTCGGGTAGTTTCCCAGTGAAGTGGCATATGATTAAAGACGTACAGAATACCAGCTTTAGGCACATCATCTTAGAGAACAATGAACATAAGCCGGTGACT AATAGTAGAGACACTCAAGAGGTACTGCTTAAACAGGGCCTCCAGATGCTGAAGATTTTCAAAAATCATATCGTCGATACCTCTCTGCTTGATGACTTCA TGTACTACGAGAACCGACAGAGGATCATGCAACAAGAGAAAGCCCGGTACATGAGTAAAAGTTTAGGAACTCCATTTCTAGCAGCTGCATTAGTTCCCAC TCCCAAGCTAAACAGTCGAGTTGGCTTATCATCAGTTAAAGAAGAGAAAGCTGTGGTCGAGAATGCCTCAAACAGCTTGAAGGAAACCGACGTATCGGCT ACTGCCAAAATCAGTTCAAAATCTGAATCCACCAGCGTCGAAAGTCAGTTGCTTGACAAAGGAGTTGGTAATGACGTAGTATCGGCTGCTTTGAAGATTG GCTCGCTAAGTATAAATCCATCCAAGCCACAATCTTTGGCAAGTCCGAATGATGCTGTTCTAGCAGCTACAGCAGCTGTTAGCAAAGCTGTTGATGTTGT AACGGTAGGGTCGGTGCCTGTGAAGGTGAATGGAGTTTCTGAAGCTTCTCCTCGTGTTCTAACCTTTGGCACGGTTCCACTTGATACAAAGACTTTGCAG AATAGAAAAGTTGGGTCTGGCCGAGTTTGA
AA sequence Show only first row Show all	>Lus10017111 pacid=23167446 polypeptide=Lus10017111 locus=Lus10017111.g ID=Lus10017111.BGIv1.0 annot-version=v1.0 MEMYNVSGNPNTENYMVFSYCSLTAIQQTAIDPNLSTPVFEQVQAMYNAGAPEFVVDQGMYYPTATNYGYYCTGFETPGEWEDHHGIFGVDGPEVQYAGA QTENLPYAYYTPSYGYAQSSYNPYNPYIPGAMMGVDDTYVGAQQYYALPPYQDSMSAAGYIPYVVQQDMVPSNLVEQLPDAGIIYGDEQGGRTSKQGPTS AAYSRNPSKSSANLNQSLSRTSEGPKPNVGSSKYSVVHENASSGRFQAPASRVLQGRNASGTAHAVDNTVKVKAPPLRDQLKFALPVNNGITDFGSESHL RPFDKHRSNIQAGRTFNDVDGCQEALGEQNRGPRTTRSENQLAVKSYTTRTGGSNAEGNIIIHTDRYNRDDFQIDFAFAKFFVIKSYSEDDVHKSIKYNV WSSTLHGNKKLQSAYEDAQKIAAEKVTSCPVFLFFSVNASGQFCGVAEMIGPVDLKKDMDFWQQDKWSGSFPVKWHMIKDVQNTSFRHIILENNEHKPVT NSRDTQEVLLKQGLQMLKIFKNHIVDTSLLDDFMYYENRQRIMQQEKARYMSKSLGTPFLAAALVPTPKLNSRVGLSSVKEEKAVVENASNSLKETDVSA TAKISSKSESTSVESQLLDKGVGNDVVSAALKIGSLSINPSKPQSLASPNDAVLAATAAVSKAVDVVTVGSVPVKVNGVSEASPRVLTFGTVPLDTKTLQ NRKVGSGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48110		ECT7	evolutionarily conserved C-ter...		Lus10017111 [exp]	0	1
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	4.5	0.8495
AT2G25800			Protein of unknown function (D...		Lus10013391 [exp]	8.6	0.8424
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	10.2	0.8200
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	12.0	0.8237
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	13.7	0.8210
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	13.9	0.8318
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	15.7	0.8298
AT5G47400			unknown protein		Lus10004740 [exp]	21.8	0.8030
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	30.0	0.8079
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	31.0	0.8075

Compare expression of checked genes

Lus10017111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.