Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48130 335 / 4e-118 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT5G06290 96 / 6e-24 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 95 / 2e-23 Thioredoxin superfamily protein (.1) AT3G52960 44 / 4e-05 Thioredoxin superfamily protein (.1) AT3G26060 43 / 6e-05 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018342 [exp] 444 / 3e-161 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10008810 [exp] 135 / 7e-41 AT1G48130 107 / 2e-30 1-cysteine peroxiredoxin 1 (.1) Lus10016969 [exp] 96 / 6e-24 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10021295 [exp] 96 / 7e-24 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10033424 [exp] 41 / 0.0003 AT3G26060 278 / 1e-95 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10034892 [exp] 41 / 0.0003 AT3G26060 281 / 6e-97 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10003373 [exp] 40 / 0.0005 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099900 [exp] 375 / 3e-132 AT1G48130 322 / 2e-111 1-cysteine peroxiredoxin 1 (.1) Potri.006G204900 [exp] 95 / 2e-23 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.016G072100 [exp] 94 / 4e-23 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.018G063300 [exp] 44 / 3e-05 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G137500 [exp] 42 / 8e-05 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.013G102100 [exp] 40 / 0.0005 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family CL0172 [flax] [poplar] PF10417 [flax] [poplar] 1-cysPrx_C C-terminal domain of 1-Cys peroxiredoxin
Representative CDS sequence Show only first row Show all	>Lus10017112 pacid=23167432 polypeptide=Lus10017112 locus=Lus10017112.g ID=Lus10017112.BGIv1.0 annot-version=v1.0 ATGCCTGGACTCACCATTGGGGACACCGTCCCAAATCTTGAAGTGGAGAGCACTCATGGAGTCATCAATCTCCACGACTTCTTCACCAATTCCTGGACCA TCCTCTTTTCTCACCCCGGTGATTTCACGCCGGTGTGCACCACGGAACTAGGGAAGATGGCAGCTTATGCGCCGGAGTTTGAGAAGAGAGGGGTCAAACT CCTGGGCTTGTCATGCGACGACGTTTTGTCTCATGTCGAGTGGATCAAGGACGTAGAAGCCTTCACCCCGGGGAGCAAGGTGACGTACCCAATCATCTCC GATCCGAATCGGGATGTAATAAAGCAGCTGAACATGGTGGATCCCGACGAGAAAGATCCATCGGGGAACAACGTCCCTTCCCGTGCTCTGCATATTGTGG GCCCTGATAAGAAGATAAAGCTGAGCTTTCTGTACCCGGCGAGCACGGGGAGGAACATGGAGGAAGTGATGAGGGTGGTGGAGTCGCTGCAGAGGGCGTC GAAGCACAAGATAGCAACTCCGGCGGACTGGAAGCCAGGGGATGCGGTGGTGATATCTCCCAGCGTGTCCAATGAGGAGGCTGATAAGATGTTCCCCCAG GGGTACAAGATTGCCGACCTCCCTTCCAAGAAAGGCTATCTCCGCTTTACTCATGTTGACTAG
AA sequence Show only first row Show all	>Lus10017112 pacid=23167432 polypeptide=Lus10017112 locus=Lus10017112.g ID=Lus10017112.BGIv1.0 annot-version=v1.0 MPGLTIGDTVPNLEVESTHGVINLHDFFTNSWTILFSHPGDFTPVCTTELGKMAAYAPEFEKRGVKLLGLSCDDVLSHVEWIKDVEAFTPGSKVTYPIIS DPNRDVIKQLNMVDPDEKDPSGNNVPSRALHIVGPDKKIKLSFLYPASTGRNMEEVMRVVESLQRASKHKIATPADWKPGDAVVISPSVSNEEADKMFPQ GYKIADLPSKKGYLRFTHVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10017112 [exp]	0	1
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10025707 [exp]	8.1	0.8738
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10035955 [exp]	13.5	0.8667
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	14.3	0.8713
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10018358 [exp]	18.3	0.8646
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	24.3	0.8599
AT3G07750			3'-5'-exoribonuclease family p...		Lus10012336 [exp]	26.7	0.8506
AT5G36000			unknown protein		Lus10004013 [exp]	27.3	0.8573
AT1G01920			SET domain-containing protein ...		Lus10019677 [exp]	28.7	0.7251
AT3G52610			unknown protein		Lus10014215 [exp]	30.2	0.8551
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	33.0	0.8521

Compare expression of checked genes

Lus10017112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.