Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 127 / 4e-34 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G27510 122 / 6e-33 Protein kinase superfamily protein (.1) AT5G67080 119 / 5e-31 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 117 / 2e-30 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G46140 110 / 6e-28 Protein kinase superfamily protein (.1) AT2G42550 109 / 2e-27 Protein kinase superfamily protein (.1) AT5G55090 108 / 1e-26 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT2G41930 105 / 5e-26 Protein kinase superfamily protein (.1) AT4G26890 104 / 4e-25 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT3G45790 101 / 2e-24 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039141 [exp] 246 / 8e-81 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10026894 [exp] 224 / 2e-72 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 216 / 6e-69 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 206 / 5e-65 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034288 [exp] 192 / 8e-60 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 182 / 5e-57 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034246 [exp] 150 / 1e-44 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10029047 [exp] 119 / 6e-33 AT3G50310 93 / 5e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10012668 [exp] 122 / 3e-32 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131100 [exp] 133 / 6e-37 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.001G042400 [exp] 130 / 8e-35 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.005G139300 [exp] 125 / 3e-33 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 124 / 8e-33 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.003G184200 [exp] 122 / 6e-32 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.005G139200 [exp] 120 / 2e-31 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.006G181000 [exp] 119 / 3e-31 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.004G171500 [exp] 108 / 2e-27 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.010G092000 [exp] 102 / 4e-24 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.008G149500 [exp] 101 / 8e-24 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017114 pacid=23167492 polypeptide=Lus10017114 locus=Lus10017114.g ID=Lus10017114.BGIv1.0 annot-version=v1.0 ATGAGATTCTTCACCAAGGATGAAGGAGAAGCAACAGCCTTTTCTCAGTTGCAGACAGCTGAGGAGAAGTTGGAGTTCCTTCTGAACTTCGTCTTACTTC TCCGGATGATGGCCGTGAAATCGGCGCCGGAGAACAAAGCTTCTTCCCTGGTGTACGAGTACCAAATTCTCCGGCGCTTTGGCGGCATCCCCGGAATAAT CCAGTGCTTCGGCGGAGGATTCTCCCGCGACGACCATAATCCCGACACACTGGGAGCTTTTCCGGAGGTCTACGTGAGGAGCTGCACTCGATTGCTCCTC AAAACCCTTTACCGTATCCACTCAATGGGATACATCCACTGCGACATCAAGCCGGACAACATCCTCGTTTTTCGGGAAGCTGATGATCCTGAAATCTGCT CGTCGAAGATCGCCGACTTCGGACTCGCCGTGGAGACGTGGACGATCCATCCGAGGAGCAAGAACTACAGGGGGGCGTTGAATTACATGCCGCCGGAGGT TGTGGTTTTGAAGAGGATTTCGCAGGCTTTGGCCTGCACTGTCATCGAGATGTTGAGGGGGAATCGCCCATGGAGTGGTTTGAAAGAGAAGAGTGAAGTC AGGGGTCAAATCGGGATAGGAAGGCATCCGGAGATCCCGTTCTGGCTGTCGAGTGAGGGGAAAGATTTCTTGGAAAAGTGCTTCATCGATACCTCTTACG CCCGATTCTCTTCCGAGATGCTTCTATCTCATCCATTCATCACCGGCGAGAAGCTCCAGCCGAACAGAATGCAACCTCCTCTGCTTCCTCATCAGATGTT TCAACAGGGCGGCGGTGGCGGCAGGGCAGCTTTGAGATGTGTTAGGGAAATTTGTACTTTTGTTTCCGAGGATTGTAATGTATAG
AA sequence Show only first row Show all	>Lus10017114 pacid=23167492 polypeptide=Lus10017114 locus=Lus10017114.g ID=Lus10017114.BGIv1.0 annot-version=v1.0 MRFFTKDEGEATAFSQLQTAEEKLEFLLNFVLLLRMMAVKSAPENKASSLVYEYQILRRFGGIPGIIQCFGGGFSRDDHNPDTLGAFPEVYVRSCTRLLL KTLYRIHSMGYIHCDIKPDNILVFREADDPEICSSKIADFGLAVETWTIHPRSKNYRGALNYMPPEVVVLKRISQALACTVIEMLRGNRPWSGLKEKSEV RGQIGIGRHPEIPFWLSSEGKDFLEKCFIDTSYARFSSEMLLSHPFITGEKLQPNRMQPPLLPHQMFQQGGGGGRAALRCVREICTFVSEDCNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10017114 [exp]	0	1
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10039741 [exp]	6.7	0.6397
AT1G31240			Bromodomain transcription fact...		Lus10040612 [exp]	21.0	0.6040
AT3G20430			unknown protein		Lus10024443 [exp]	21.2	0.6107
AT5G49100			unknown protein		Lus10006504 [exp]	40.7	0.6443
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	55.9	0.6099
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036526 [exp]	73.2	0.5884
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10003263 [exp]	94.0	0.5713
AT5G17510			unknown protein		Lus10024979 [exp]	103.9	0.5855
AT1G06240			Protein of unknown function DU...		Lus10017666 [exp]	107.9	0.5841
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10038733 [exp]	129.7	0.5640

Compare expression of checked genes

Lus10017114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.