Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17440 347 / 6e-121 ATNPSN13, NPSN13 novel plant snare 13 (.1.2) AT1G48240 337 / 3e-117 ATNPSN12 novel plant snare 12 (.1) AT2G35190 266 / 2e-89 NSPN11, ATNPSN11, NPSN11 novel plant snare 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018338 [exp] 414 / 1e-146 AT3G17440 375 / 2e-131 novel plant snare 13 (.1.2) Lus10003004 [exp] 256 / 3e-85 AT2G35190 366 / 5e-129 novel plant snare 11 (.1) Lus10011034 [exp] 187 / 6e-59 AT2G35190 274 / 2e-93 novel plant snare 11 (.1) Lus10000163 [exp] 128 / 6e-38 AT3G17440 103 / 3e-29 novel plant snare 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001900 [exp] 364 / 3e-128 AT3G17440 429 / 8e-154 novel plant snare 13 (.1.2) Potri.003G085200 [exp] 292 / 1e-99 AT2G35190 391 / 6e-139 novel plant snare 11 (.1) Potri.001G149200 [exp] 283 / 6e-96 AT2G35190 389 / 4e-138 novel plant snare 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF03908 [flax] [poplar] Sec20 Sec20
Representative CDS sequence Show only first row Show all	>Lus10017116 pacid=23167409 polypeptide=Lus10017116 locus=Lus10017116.g ID=Lus10017116.BGIv1.0 annot-version=v1.0 ATGGCCACCAACTTGCAGATGGGTTCTAAGATGGAGCAGATCCATGGCGAAATCAACGACAATTTCCGTGCTCTCTCAAATGGCTTCCAGAGGCTTGACA AGATTAAAGACTCGAATCGACAGAGTAAGCAGCTTGAGGAGCTTACTGGCAGGATGAGAGAATGCAAAAGACTGATTAAGGAGTTTGATAGTGAGATTAA AGATGAGGAAGCCAGAAACCCACCTGAGGTCACTAAACAGCTCAATGATGAGAAGCAATCCATGATAAAAGAGCTGAATTCCTATGTTGCATTGAGGAAG ACGTACACCAACAATCTTGGTAACAAGAGGGTGGAATTGTTTGATATGGGAGCTGGGGCCAGTGAACCTATGGCTGATGACAATGTTCGAATGGCATCAG CTATGTCAAACCAAGAGCTTATTGATCATGGGACGCAACAAATGGATGAGACCGATCAAGCGATTGAGCGCTCCAAAAAGGTTGTTCAACAAACAGTGGA AGTGGGCACTCAAACTGCTGTTACGTTGAAAGGTCAAACTGAGCAAATGGAACGAATTGTTAATGAGCTGGACACAATTCAGTTTTCAATTAAGAAGGCT TCACAGCTCGTAAAGGAGATTGGGAGGCAGGTGGCAACTGATAAATGCATTATGCTTTTCCTGTTTCTTATTGTCTGTGGTGTAATATCCATTGTCTGTG GTGTAATAGCCATAATCATTGTGAAGATCGTCAACCCGGGCAACAAGGATATCAGGGACATCCCCGGATTGGCACCCCCAGCCCCGGCAGCCAGGAGACT GTTATATGCAAGGGGTCCACGAAATCTCGAGTAG
AA sequence Show only first row Show all	>Lus10017116 pacid=23167409 polypeptide=Lus10017116 locus=Lus10017116.g ID=Lus10017116.BGIv1.0 annot-version=v1.0 MATNLQMGSKMEQIHGEINDNFRALSNGFQRLDKIKDSNRQSKQLEELTGRMRECKRLIKEFDSEIKDEEARNPPEVTKQLNDEKQSMIKELNSYVALRK TYTNNLGNKRVELFDMGAGASEPMADDNVRMASAMSNQELIDHGTQQMDETDQAIERSKKVVQQTVEVGTQTAVTLKGQTEQMERIVNELDTIQFSIKKA SQLVKEIGRQVATDKCIMLFLFLIVCGVISIVCGVIAIIIVKIVNPGNKDIRDIPGLAPPAPAARRLLYARGPRNLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	0	1
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	1.0	0.8865
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	3.2	0.8846
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	3.5	0.8784
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	3.9	0.8673
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10040534 [exp]	6.0	0.8251
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	6.3	0.8730
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10011806 [exp]	6.6	0.8272
AT1G30630			Coatomer epsilon subunit (.1)		Lus10003497 [exp]	7.0	0.8440
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	9.4	0.8415
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	13.9	0.8530

Compare expression of checked genes

Lus10017116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.