Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06483 461 / 1e-163 ATPDHK, PDK pyruvate dehydrogenase kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018337 [exp] 585 / 0 AT3G06483 617 / 0.0 pyruvate dehydrogenase kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002000 [exp] 471 / 4e-167 AT3G06483 653 / 0.0 pyruvate dehydrogenase kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10436 [flax] [poplar] BCDHK_Adom3 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
Representative CDS sequence Show only first row Show all	>Lus10017117 pacid=23167459 polypeptide=Lus10017117 locus=Lus10017117.g ID=Lus10017117.BGIv1.0 annot-version=v1.0 ATGGCGGGTGCAGTGAAGAAGAAGGTGATGGAGAGTATGGGGAAGAACATGGCGGAGGAAGTACAGAGGTGGGGATGCATGAAGCAGAACGGGGTTAGCT TGAGGTACATGCTTGAATTCGGTTCCAAACCTACCATCCGCAACCTCTTGTTCTCTGCTCAGTTCCTCCACAAGGAGCTTCCTATTCGGATCGCTCGCCG TGTTATGGACCTCGACACCCTTCCTTACGGCCTCTCTGACAAACCCGCCGTCCTCAAGGTGCGGGATTGGTACTTGGATTCTTTCCGTGATCTCAGAGCC TTCCCTGAGATAAAGGATCCCAGTGATCAAGCCGACTTTACGCATATGATCAAAGCAATCAAGGTGAGGCACAACAATGTGGTTCCCATGATGGCTTTAG GAGTTCAACAGTTGAAGAAAGGCATGAAGCACCCCACTCTTTATGAAGGTCTAGATGAGATTCATGAGTTTCTCGATAGGTTCTATATGTCCAGGATTGG TATTCGTATGCTCATCGGGCAGCATGTGGAGCTGCAGAATCCTAATCCGGCTCCTCATTGCGTGGGTTGTATACATACTAAAATGTCCCCAGTTGAGGTC GCTCGGAACGCTAGTGAGGATGCTCGTTCTATCTGTTCCAGAGAGTATGGCAGTGCTCCGGATGTTACCATCTACGGGGATCCCAATTTTACATTCCCGT ACGTGCCGGCACATTTGCATCTTATGGTATTTGAGCTGGTTAAGAACTCGGTCCGTGCTGTGCAAGAGCGTTATATCGACTCAGATAAAGTAGCACCTCC AGTTCGGATAATAGTTGCTGAAGGAATAGAAGATGTTACCATAAAGGTGATCCCTCCTGATGTTTTAATTTTTTGTGGACAATGGCTGGATATGGATACG GTATCCCTATTAGTCGCTTGTATGCTCGGTATTTCGGAGGTGACCTTCAAATTATCTCCATGGAAGGATACGGCACGGATGCATACCTCCATCTGTCACG ATTGGGAGATTCACAAGAACCTCTCCCTTGAAGCTGAACACTCTTGA
AA sequence Show only first row Show all	>Lus10017117 pacid=23167459 polypeptide=Lus10017117 locus=Lus10017117.g ID=Lus10017117.BGIv1.0 annot-version=v1.0 MAGAVKKKVMESMGKNMAEEVQRWGCMKQNGVSLRYMLEFGSKPTIRNLLFSAQFLHKELPIRIARRVMDLDTLPYGLSDKPAVLKVRDWYLDSFRDLRA FPEIKDPSDQADFTHMIKAIKVRHNNVVPMMALGVQQLKKGMKHPTLYEGLDEIHEFLDRFYMSRIGIRMLIGQHVELQNPNPAPHCVGCIHTKMSPVEV ARNASEDARSICSREYGSAPDVTIYGDPNFTFPYVPAHLHLMVFELVKNSVRAVQERYIDSDKVAPPVRIIVAEGIEDVTIKVIPPDVLIFCGQWLDMDT VSLLVACMLGISEVTFKLSPWKDTARMHTSICHDWEIHKNLSLEAEHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	0	1
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	1.4	0.9376
AT5G16550			unknown protein		Lus10002085 [exp]	3.5	0.8983
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	4.0	0.9049
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	4.2	0.9049
AT1G64140			unknown protein		Lus10024712 [exp]	5.9	0.8975
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	6.3	0.8882
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	7.3	0.8895
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	7.7	0.8830
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	9.4	0.8879
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	9.5	0.8863

Compare expression of checked genes

Lus10017117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.