Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10710 78 / 2e-16 RHS12 root hair specific 12 (.1) AT5G49180 78 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 69 / 2e-13 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 69 / 3e-13 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 66 / 3e-12 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14300 63 / 4e-11 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT5G04960 62 / 6e-11 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G15980 60 / 3e-10 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G62170 59 / 7e-10 VGDH2 VANGUARD 1 homolog 2 (.1) AT1G53840 57 / 3e-09 ATPME1 pectin methylesterase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018335 [exp] 375 / 5e-128 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 76 / 2e-15 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10034859 [exp] 66 / 4e-12 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10033399 [exp] 63 / 3e-11 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10033466 [exp] 60 / 3e-10 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 59 / 7e-10 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 59 / 9e-10 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031469 [exp] 57 / 2e-09 AT3G05610 442 / 4e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037457 [exp] 56 / 8e-09 AT1G53840 234 / 1e-72 pectin methylesterase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022900 [exp] 79 / 1e-16 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 70 / 1e-13 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 69 / 3e-13 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 67 / 1e-12 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.003G021600 [exp] 63 / 4e-11 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 62 / 6e-11 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 59 / 6e-10 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011200 [exp] 57 / 2e-09 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.001G209000 [exp] 57 / 4e-09 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G128200 [exp] 52 / 3e-08 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10017118 pacid=23167418 polypeptide=Lus10017118 locus=Lus10017118.g ID=Lus10017118.BGIv1.0 annot-version=v1.0 ATGCAGGTGAGGCAAAAGCCATTAATAGCAGGAGTGTCGATCATACTAGTGGTCGGCGTAGTCATCGGCGTAGTTGTCAGCGTCAAAAAGGGGAACGACG GCCATTCCGGAAATGACGGAACTAACTCTGACGTGGACGCACTCTCCTCCGCTTCAAGGGCAGTAGCGGCAATTTGCGTCCACACGGACCACAAGCAGCA CTGCGTCGACAGCATGAAATCCGTCTCCCAGAACGAATCCGCAACCCCAGTGGATTACATGAAGGCCGCCGTCAACTACACCATGGCCTATGTGGTCGAG GCCGCCCGAAACGCTGCGTTGCTGCAGAACCAGACGTACAAGGGCAAGGGTAAAGACGCCAATATGACGCGGGCGCTGGCGTTCAAGTACTGCGGGGAGC TGCTGGACCTGAGCGCGGACGAGCTAAGGACCACGTTGGCCCAGCTGGAGAATGTGAAGCAGACCGTGGATGTGATGGAGCTTGAGCAGGAGATTCGGAA CTGGCTTAGCGCGGTTATGACGTACCATGGCACGTGCGTGGACGGGTTCGCTGGGGATGACGGTGGAGATGATCTGCATGAAGGGATCTCGAAAGGGTTG GAGAACTCGACTCAGTTGACCAGCAACGCGCTTGCGATATTTGCGAGCGTGTCTGAGATTCTCACCGACTTCAACCTTACATCGTCCTTCCAGGTTGGGA AGTTCTTAAACTACTACATAAACTGA
AA sequence Show only first row Show all	>Lus10017118 pacid=23167418 polypeptide=Lus10017118 locus=Lus10017118.g ID=Lus10017118.BGIv1.0 annot-version=v1.0 MQVRQKPLIAGVSIILVVGVVIGVVVSVKKGNDGHSGNDGTNSDVDALSSASRAVAAICVHTDHKQHCVDSMKSVSQNESATPVDYMKAAVNYTMAYVVE AARNAALLQNQTYKGKGKDANMTRALAFKYCGELLDLSADELRTTLAQLENVKQTVDVMELEQEIRNWLSAVMTYHGTCVDGFAGDDGGDDLHEGISKGL ENSTQLTSNALAIFASVSEILTDFNLTSSFQVGKFLNYYIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10017118 [exp]	0	1
					Lus10013380 [exp]	2.8	0.8298
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10022259 [exp]	4.4	0.8860
					Lus10006897 [exp]	4.6	0.7989
AT4G33985			Protein of unknown function (D...		Lus10027898 [exp]	19.0	0.7350
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10027821 [exp]	21.7	0.7218
AT2G21100			Disease resistance-responsive ...		Lus10034473 [exp]	24.5	0.7245
AT3G14880			unknown protein		Lus10039196 [exp]	24.7	0.7345
					Lus10017290 [exp]	29.8	0.6997
AT2G32885			Rapid alkalinization factor (R...		Lus10000923 [exp]	29.9	0.7012
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	39.9	0.6949

Compare expression of checked genes

Lus10017118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.