Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33230 269 / 7e-87 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 268 / 4e-86 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 265 / 1e-84 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 263 / 3e-83 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 255 / 7e-82 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 255 / 9e-82 RHS12 root hair specific 12 (.1) AT3G14310 250 / 1e-79 ATPME3 pectin methylesterase 3 (.1) AT5G49180 249 / 2e-79 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 245 / 2e-78 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 245 / 8e-78 ATPME2 pectin methylesterase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018335 [exp] 481 / 1e-169 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 275 / 2e-91 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 276 / 3e-89 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 271 / 9e-88 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 270 / 2e-87 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 261 / 1e-84 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028536 [exp] 246 / 9e-83 AT3G60730 322 / 6e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 254 / 2e-82 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 255 / 5e-82 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209000 [exp] 309 / 7e-103 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 307 / 4e-102 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 298 / 5e-98 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 295 / 6e-97 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 287 / 2e-94 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 282 / 2e-92 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 267 / 3e-86 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 256 / 1e-82 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 255 / 3e-82 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 254 / 4e-82 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10017119 pacid=23167442 polypeptide=Lus10017119 locus=Lus10017119.g ID=Lus10017119.BGIv1.0 annot-version=v1.0 ATGTACGGTGATGGTCCACGTAAGACCATCGTTACTGGACGGAAGAGCTTCAAGGATGGTGTCCCCACTTACGGCACTGCCTCCTTCTCAGGAGCAATAG GCCACCAAGCAGTAGCCCTCAGAGTCCAATCCGACCGTTCATCTTTCTACAACTGCAGAATGGACGGCTACCAAGACACCCTCTACCAACAAGCCCACTA CCAATTCTACCGCAACTGCGTCATCTCCGGTACCGTCGACTTCATCTTCGGCGACTCCTCAGCCCTCGTCCAGAACTGCCTCATCATCGTCCGCATGCCC ATGCAAGGTCAGCAGACCACCGTCACCGCCCAGGGCAAACAAGACAAGAACGAGGTCACCGGACTCGTCATCCAGAACTGCAAGATCGTACCCGAAGCCA AACTCGCGCCGGTCACCGCCAAGTTCCCATCTTTCCTAGGAAGGCCGTGGAAGCAGTACTCGATGACGATTGTGATGGAGTCTATCATCGGAGGGTTCAT AAGCCCTCTTGGTTGGATGCCGTGGCAAGGGAGCATGTACCTGGACACGTTGTTTTATGGGGAGTATGGGAACAAGGGACCCGGGTCGGGTACGGGCGGG CGGGTCAACTGGAAAGGGTACCATGTGTTGACCCAGAAGGCTCAGGTTTTGAAGTATACGGCGGGGCCTTTCCTTGCTGCTTCTCAGTGGTTGCCGGCGG CTGGGATTCCGTTCATTTCTGGCCTCCGGTATCCTTAG
AA sequence Show only first row Show all	>Lus10017119 pacid=23167442 polypeptide=Lus10017119 locus=Lus10017119.g ID=Lus10017119.BGIv1.0 annot-version=v1.0 MYGDGPRKTIVTGRKSFKDGVPTYGTASFSGAIGHQAVALRVQSDRSSFYNCRMDGYQDTLYQQAHYQFYRNCVISGTVDFIFGDSSALVQNCLIIVRMP MQGQQTTVTAQGKQDKNEVTGLVIQNCKIVPEAKLAPVTAKFPSFLGRPWKQYSMTIVMESIIGGFISPLGWMPWQGSMYLDTLFYGEYGNKGPGSGTGG RVNWKGYHVLTQKAQVLKYTAGPFLAASQWLPAAGIPFISGLRYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33230			Plant invertase/pectin methyle...		Lus10017119 [exp]	0	1

Compare expression of checked genes

Lus10017119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.