Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48270 345 / 6e-116 GCR1 G-protein-coupled receptor 1 (.1) AT3G17510 254 / 6e-80 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT1G48260 238 / 1e-72 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1) AT5G21326 211 / 2e-62 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G30270 204 / 2e-59 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G26980 194 / 1e-56 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G01140 187 / 1e-53 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G01810 181 / 2e-51 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G35410 179 / 1e-50 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT5G45820 179 / 2e-50 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018333 [exp] 389 / 6e-133 AT1G48270 389 / 6e-136 G-protein-coupled receptor 1 (.1) Lus10018334 [exp] 348 / 2e-115 AT3G17510 441 / 6e-153 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Lus10019411 [exp] 199 / 7e-58 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10043264 [exp] 201 / 4e-57 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10042816 [exp] 194 / 6e-56 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 194 / 1e-55 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10022590 [exp] 191 / 3e-55 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10009925 [exp] 182 / 4e-51 AT2G30360 553 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10022749 [exp] 180 / 9e-51 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G206000 [exp] 363 / 4e-123 AT1G48270 477 / 4e-171 G-protein-coupled receptor 1 (.1) Potri.010G002500 [exp] 273 / 6e-86 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.006G062800 [exp] 200 / 5e-58 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.009G021000 [exp] 197 / 4e-57 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.001G222600 [exp] 194 / 5e-56 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G119200 [exp] 194 / 9e-56 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G096042 [exp] 193 / 1e-55 AT5G57630 535 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) Potri.006G171400 [exp] 193 / 2e-55 AT5G57630 549 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) Potri.018G130500 [exp] 190 / 1e-54 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G186200 [exp] 185 / 8e-53 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF05462 [flax] [poplar] Dicty_CAR Slime mold cyclic AMP receptor CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017120 pacid=23167457 polypeptide=Lus10017120 locus=Lus10017120.g ID=Lus10017120.BGIv1.0 annot-version=v1.0 ATGGGGACTGTGCCGCTCAGTCCCGGCAACCTAACGGCTCACGATCGCCGACTTCTAAGGTCCATCAATGCGGGAGCATCCTCCTTCTCCTTCCTCGGCT CCAGCTTCATTGTCCTCTGCTACCTCCTCTTCAGAGATCTCCGCAAGTTCTCCTTCAAGCTCGTCTTTTACCTAGCAATCTCTCTTCTGAATTGTAGGGA TCCCTCCACAGGCTTCTTTTGCTATGCTCAGGGATATAGTACTCATTTCTTCTGCGTCGCTTCTTTCCTGTGGACTACTACTATTGCTTTCACCCTGCAT CGTACTGTTGTTAAACACAAAACTGATGTTGAAGACTTGGAGGCCATGTTCCATTTGTTCGTTTGGGGAACGTCGTTGGTTATGACTGCCATACGCTCCA TTGGTAATGACCATAGACACTTGGGAGGGGCATGGTGTTCAACACAATCAGGAAGAACAAAAAAGATGGCTGTAGGCATGTCAGATCGTGCCTCTGATGT AAGGCCGGACATGAAGGCTTTGAACAGGTGGGGATACTATCCGCTTATCCTTATTGGATCATGGGCTTTTGGCACGATAAATGTCATCCATGATTTTATT GAACCAGGCCACCAAATCTTTTGGCTTTCCGTGCTTGATGTGGGTACAGCTGCCCTAATGGGGCTCTTCAACTCGATAGCATATGGCTTAAATTCATCAG TACGGAGGGCAATCTCCGAAAGATTAGACCTGGTTGTTTTAGGTCGAACAAGCAAGTCGAAGCTTTACATGATTCTAGAGTATGTGAGCGGCGGCGAACT CTACGACCGAATTCCGGAGAATGTTCTTATTGATGCAAAAGGACGCATCAAGATATCGGACTTCGGACTCAGCGCATTGCCCCGCCATTTAGGGAAAGAC GGGCTACTTCACACGCTATGCGGAAGCCCGAACTACGTGGCACCGGAGATACTACTCAACAAAGGATACGACGGTGCAGCCTCCGACGTCTGGTCTTGCG GGGTTATCCTGTACGTCATCCTCACTGGATTCCTCCCTTTCGAGGACAGAAACATCACTTCCTTGTATGACAAGATAGTGAAGGGGAAGGTGGAGATACC AAAGGAGCTGAGTTCGGGTGCGGGGAAGTTGATAGTGATGATATTGGATTCAAATCCTGATATCAGAATCATAATGTCTGGTATCAAAGCTGATGAGTGG TTCAACCAAGACTATTTTGGTCCGACCAAATACTCTAACCGACATGATGATCAACATCAAGACGATCATCACGTTGTAGAAGAAATCACGGAGGACGTTG ATGATGATGAGGAGGAAAATGGTCGACGAGTACTTGATGGTCATGTAGCAGCTAGTACTAGTACCGGCAGCGATCTTGGTGTAAGGATGGTGAACGCATT TCAACTAATCGGGATGTCTTCTTTTCTTGACCTCTCTGGCTTCTTCGAGGAAGTGGAATATTCAGAGAGGAGGACGAGGTTTGCGGCATCGAGCTACTCA TTGAAAGATTTGGTTAAGAAGGTAGTAGAGATTGTTACTGACATGAGATTTCGGGTAGTCCACAAGAGGAACCGAACCGAATTCAGGTGA
AA sequence Show only first row Show all	>Lus10017120 pacid=23167457 polypeptide=Lus10017120 locus=Lus10017120.g ID=Lus10017120.BGIv1.0 annot-version=v1.0 MGTVPLSPGNLTAHDRRLLRSINAGASSFSFLGSSFIVLCYLLFRDLRKFSFKLVFYLAISLLNCRDPSTGFFCYAQGYSTHFFCVASFLWTTTIAFTLH RTVVKHKTDVEDLEAMFHLFVWGTSLVMTAIRSIGNDHRHLGGAWCSTQSGRTKKMAVGMSDRASDVRPDMKALNRWGYYPLILIGSWAFGTINVIHDFI EPGHQIFWLSVLDVGTAALMGLFNSIAYGLNSSVRRAISERLDLVVLGRTSKSKLYMILEYVSGGELYDRIPENVLIDAKGRIKISDFGLSALPRHLGKD GLLHTLCGSPNYVAPEILLNKGYDGAASDVWSCGVILYVILTGFLPFEDRNITSLYDKIVKGKVEIPKELSSGAGKLIVMILDSNPDIRIIMSGIKADEW FNQDYFGPTKYSNRHDDQHQDDHHVVEEITEDVDDDEEENGRRVLDGHVAASTSTGSDLGVRMVNAFQLIGMSSFLDLSGFFEEVEYSERRTRFAASSYS LKDLVKKVVEIVTDMRFRVVHKRNRTEFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10017120 [exp]	0	1
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	2.4	0.8044
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	3.3	0.8086
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	4.9	0.8081
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	9.5	0.7878
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	10.4	0.7468
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	10.6	0.7943
AT3G51050			FG-GAP repeat-containing prote...		Lus10025977 [exp]	10.8	0.7516
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	12.1	0.7526
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	13.9	0.7578
AT2G21190			ER lumen protein retaining rec...		Lus10042389 [exp]	20.6	0.6933

Compare expression of checked genes

Lus10017120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.