Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31880 319 / 6e-95 unknown protein AT1G15940 235 / 2e-64 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 206 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 192 / 8e-50 binding (.1.2.3) AT1G77600 114 / 1e-25 ARM repeat superfamily protein (.1.2.3) AT5G10950 71 / 2e-12 Tudor/PWWP/MBT superfamily protein (.1) AT4G02070 64 / 7e-10 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G32970 51 / 4e-06 unknown protein AT2G44440 45 / 0.0002 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018332 [exp] 1365 / 0 AT4G31880 464 / 2e-149 unknown protein Lus10026078 [exp] 184 / 2e-50 AT4G31880 228 / 1e-66 unknown protein Lus10002307 [exp] 171 / 2e-45 AT4G31880 214 / 4e-61 unknown protein Lus10038777 [exp] 176 / 1e-44 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10039082 [exp] 174 / 4e-44 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10018180 [exp] 103 / 5e-22 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10025655 [exp] 102 / 1e-21 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10010010 [exp] 57 / 7e-08 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10025030 [exp] 46 / 0.0001 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020400 [exp] 493 / 3e-159 AT4G31880 389 / 3e-120 unknown protein Potri.006G263300 [exp] 424 / 4e-132 AT4G31880 424 / 8e-133 unknown protein Potri.001G046500 [exp] 257 / 2e-72 AT4G31880 267 / 1e-76 unknown protein Potri.003G181300 [exp] 230 / 5e-63 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.018G109600 [exp] 213 / 4e-58 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 194 / 2e-51 AT4G31880 167 / 8e-43 unknown protein Potri.016G005400 [exp] 169 / 2e-42 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 160 / 7e-40 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 137 / 9e-33 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.014G121701 [exp] 57 / 9e-08 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017121 pacid=23167463 polypeptide=Lus10017121 locus=Lus10017121.g ID=Lus10017121.BGIv1.0 annot-version=v1.0 ATGGCCTCTAGCGACAAGGACCTCGAAGAACAGCTCAAGGAAGCTGGAAACAAGCTCGTTAACCCTCCTTCTTCAGTGGATGAACTTCTCCGTCTTCTAG ATAAAGTTGATGGCTATCTAGCAAGGGTGGAGCAGTCACCTTCAGAGTCGATGCAAAGTGCACTGACTCCATCACTCAAGGCATTGATCACAGACAAACT TTTTAGGCATTCAGATGTAGACGTTAATGTTGCAGTGGCATCTTGCATCAGTGAAATAACAAGAATAACTGCGCCAGAAGCTCCTTATGAGGATGACCAG ATGAAGGATGTGTTTCAACTGATAATTTCTTCATTTGAAAACCTGGATGACAAAACTAGCCGATCATATTTAAAGAGGACATCTATACTTGAGACAGTTG CCAAGGTCAGGTCATGTGTGGTGATGTTGGATCTTGAATGTGATGCATTGATAGTAGAGATGTTCCAGAAGTTCCTCAAGTCTGTAAGGGAGTTCCATCC AGAGAATGTTGTTTCTTCCATGGAGACCATAATGAAACTTGTCTTAGAAGAGAGCGAAGAGATTCCTGTGGAACTGCTTTCACCCCTTTTAGTTAGCGTG ACAAAGGGAAACAAGGAGGTTTTACCTGTTGCTCGCAAGCTTGGGGAGAAAGTTCTTGAAAGTTGTGCTGAGAAGATTAAACCATACTTGGTGGATGCAT TGAAATCCTTGCAGACTTCTCCCGATGATTACTGGGATGTTGTTGGCTCAATATGCCGAGATGATACTGTGGATGATTTTGATGTGGTAGCTGCTAACAA GGTTGAAACAAGCAAGTCAGATGGGCTGTTGGTTGCCGAGGCTGCTGAAGCCACTCCAGAAGTACCTGATGCTGCTGTGAGCAATGGTGTTGCTGATACT GGGAAGGCTGCGTCATTGGCTATTGCAGATACCTTAAAGGGACAAGAGACTGATACAACTGAGCCTGCAAAAAGCGCCAATGCTGATGAGAATGTTGAGG GTGATGTTTCTGCTGTCGAGAAAGAAAGCAAGCCAGACCATAAAGCCAACAAGAGGGGTGGGAAGCATGCTGCAAAATCTGATAGTACACATACTATTGA TGAGAAAGAAGATGTGAAACTACCAGATGAAAAATACAGCAAGGATGCCCTGAGTTCACCTGATGCTCACCGATCTGTATCAAGTGATGCTGCTGTTGCT TCTGAAAATAAGAAAAAGAATGATAATCAACCTCTCTCCCCAAAAGCAGCGAATAATGAATCCTTGACTGCTTCACCATCCGTGATTGTGGATGAAAGTC TGTCCAGAAGTGTTGGTCGACCAAAGAAGAAAGCAGGTTCAGTAAAAGAACTTGGACAATCTACTGACGATGTCCTACCTAAGGAAACGGAAGGAACAAG TGACTCCAAAGCAAAGCCCACCAAACGTGCTAGTAAAAAAGCAGCGGATGATGAATCTCTGGCTGCTTCACCATCTGTAAGCGGAAGCCCTGTGGATGAA AGTCGGTCCAAAAAGGTTGCTCGCTCAAAGAAGAAAGAAGGTTCGGTGAAAGAACTTGCACAATCGACTGATGATATCCTCCAGAAGGAAACTGAAGGAA CAAGTGACTCCAAAGCAAAGCCAATCAAACGTGCTGGTAAAAATGCACATGTTGGAACTTCTAGCAATGAAAAATCTCTAAAGAAAACAAATAAATCAAA GAAAGAAGGTGTTGATGTAAGCGAACTAGATGCGAAACCTCTGAAGCATTTATCTAAGGCGAAAGATGGAAGTAAGAGTGCAGAAGGGGCTTTGTCAAAA AAGTCTGAGCAAAAGAGCAAGCGGCGTGGAAAGGCTGTTTCTGAGAAGAAGTTAGCAACAAGCTTAATGGAAGATGATGACAATGAAAATATTTCATCAC TGAAGTCTGCAGTTAAACTCGCAAAAGATGAACTTCCTGTGGAAGACACACCCAAGACAAGTGGCAAAAGAAAACGTACTACAGGCAAAGCGTCGGAAAC CGAGGATACAGCTTATGGGGAGGAAGTTGTTGGTTCAAGAGTACGAGTATGGTGGCCAGATGACAAAGAGTTTTACAAAGGCACCATTCAGTCTTATGAT TCTGTGGAAAACAAGCATGTGGTTTCCTATGACGACGGAGACGAAGAAAATCTGAATTTGAAGGAGGAAAAGTTTGAGTTCATTGATAGTGCATCTGAAA TGGAGGTTGAGGATGAAGCACCCAAAGAATCAAGTCTCGATGCATCTGAGATGCCGGCAAAGAAGAAGGCAAAATCAGATCAGTCTAATAAGAAAGGAAA GATGGACATCTCACCTAAAAGCAGGGGAAGTGGAGCTTCTAGCAAATCCAGGACTAAATTCGGGGGAAAAGGTGGGCGGAAGCCGAAGGCTATTGATGAC GACCCCAAAGCTCCCAAGAACACCGACGATGATAGTAATGCCAAGACTAAGAAACCTACTACTACTACTACTACTACTACTACTCACAAGAGTGGTTTGA AAGCTCCAGGAAAATCCAAAACGGATGATATTACAACACCTAAAGCTACTAGTGCCAAATCCAAACAAGAGAGCAGGAAGACTGCAGGAAAATCGTCCAA GTTGGAGACTCCAAAAGCAACAACCTCTTCCAACGCGAAGGGGAAGTCAGTAGGCAAGAGTGGCGGGAAACCCAATGCTAATGGCACAGGCAAGTCGAAA ACCACCGGCTCTGCAAAGGTGAAAGACACTGAGGAAGCTGGAGAGAGCTCTGCAGATTCCGGTGAAGCACAAGAGGAGACCAAGAAGGAAAAGTCAACCG TTTCCAAGGAACAGGGAAGTGAAGCAAAGAGTGGAAAGAAGCGGCCACGTGCAGCTGCTTAA
AA sequence Show only first row Show all	>Lus10017121 pacid=23167463 polypeptide=Lus10017121 locus=Lus10017121.g ID=Lus10017121.BGIv1.0 annot-version=v1.0 MASSDKDLEEQLKEAGNKLVNPPSSVDELLRLLDKVDGYLARVEQSPSESMQSALTPSLKALITDKLFRHSDVDVNVAVASCISEITRITAPEAPYEDDQ MKDVFQLIISSFENLDDKTSRSYLKRTSILETVAKVRSCVVMLDLECDALIVEMFQKFLKSVREFHPENVVSSMETIMKLVLEESEEIPVELLSPLLVSV TKGNKEVLPVARKLGEKVLESCAEKIKPYLVDALKSLQTSPDDYWDVVGSICRDDTVDDFDVVAANKVETSKSDGLLVAEAAEATPEVPDAAVSNGVADT GKAASLAIADTLKGQETDTTEPAKSANADENVEGDVSAVEKESKPDHKANKRGGKHAAKSDSTHTIDEKEDVKLPDEKYSKDALSSPDAHRSVSSDAAVA SENKKKNDNQPLSPKAANNESLTASPSVIVDESLSRSVGRPKKKAGSVKELGQSTDDVLPKETEGTSDSKAKPTKRASKKAADDESLAASPSVSGSPVDE SRSKKVARSKKKEGSVKELAQSTDDILQKETEGTSDSKAKPIKRAGKNAHVGTSSNEKSLKKTNKSKKEGVDVSELDAKPLKHLSKAKDGSKSAEGALSK KSEQKSKRRGKAVSEKKLATSLMEDDDNENISSLKSAVKLAKDELPVEDTPKTSGKRKRTTGKASETEDTAYGEEVVGSRVRVWWPDDKEFYKGTIQSYD SVENKHVVSYDDGDEENLNLKEEKFEFIDSASEMEVEDEAPKESSLDASEMPAKKKAKSDQSNKKGKMDISPKSRGSGASSKSRTKFGGKGGRKPKAIDD DPKAPKNTDDDSNAKTKKPTTTTTTTTTHKSGLKAPGKSKTDDITTPKATSAKSKQESRKTAGKSSKLETPKATTSSNAKGKSVGKSGGKPNANGTGKSK TTGSAKVKDTEEAGESSADSGEAQEETKKEKSTVSKEQGSEAKSGKKRPRAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31880			unknown protein		Lus10017121 [exp]	0	1
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	1.4	0.9529
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	1.7	0.9298
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	2.8	0.9198
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10006511 [exp]	4.9	0.9167
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	5.3	0.9379
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	9.0	0.9198
AT1G10180			unknown protein		Lus10040609 [exp]	11.0	0.9019
AT1G71760			unknown protein		Lus10030260 [exp]	12.7	0.9232
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	13.1	0.9282
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	14.1	0.9197

Compare expression of checked genes

Lus10017121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.