Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04600 473 / 2e-166 Nucleotidylyl transferase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026754 [exp] 518 / 0 AT3G04600 692 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2.3) Lus10025538 [exp] 520 / 1e-176 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10018331 [exp] 259 / 5e-85 AT3G04600 102 / 2e-25 Nucleotidylyl transferase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159300 [exp] 480 / 4e-169 AT3G04600 692 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence Show only first row Show all	>Lus10017122 pacid=23167485 polypeptide=Lus10017122 locus=Lus10017122.g ID=Lus10017122.BGIv1.0 annot-version=v1.0 ATGCAGGGAAGATCGATTACGATAAGCTTATCGTTCGGATGCCGAAGGCTTGAACCTTCAATTGTGGACCGTGTCCAACGACTGACTGGTAGAGCGCCTC ATGTCTTCCTCCGCCGCGATGTTTTCTTTGCCCATAGGGATTTTGATGAGATCCTGAATGCATATGAAAAAGGCCAAAAGTTCTACCTTTATACTGGTAG AGGTCCATCGTCTGAAGCTTTGCAGATCGGTCATCTTGTACCCTTCATGTTTACCAAATATTTGCAAGATGCATTCAAGGTGCCACTTGTTATACAACTT ACTGGTGATGAGAAGTGCGTGTGGAAGAATCTTACAGTGAAGGAGAGCAAGAGGGTTGCGGCCATATTTGGTTTCAAAGGTGAAGATCTCAATGGAAAAT TTAGTTTTCCATCAGTCCAGTTCTCTGGAAAAGATGACCTCCGTTGCTTGATTCCTTGTGCAATTGATCAGGATCCGTACTTCAGAATGACACGAGACAT TGCACCCAGGCTAGGATATCATAAACCTTCCCTGATTGAGTCATTGCTCTTCCCGGCCCTTCAGGGAGAAGCTGGAAAAAGGTCTGCCAGCGATCCGAGT TCTGCTATACATGTGACTGATTATGCCGAGGTCGTTAGGAAGAAGGTAAATAAGTATGCATTCTCTGGCGGGCAAGATTCCATAGAGAAGCACAGAGAAC TTGGGGCAAATCTTGAGGTAGACATACCAGTGAAGTCCCTAAGCTTCTTCCTGGAGGATGATGCTGAGTTCGAGCTCATTAAGACGGAATATGGCGCTGG ACGAATGTTGACCGGGGAGGTAAAGCAGCGTCTTGCTGATGTTTTGACACAACTGGTAGATCGACATCGTGCAGCTCGAGCTGCTGTGACAGAGGAAATG GTGGATACTTTCATGGCAGTGAGACCACTTCATAATCTAGTTCGCCATAGCAAGCAGAAGGAAACTCTCTTACCCTCTTCTCTTCTTCCATTTGCGGCTG CTCCTCCTCATCGCTCCGCAGTAGCCAGAGACCTCTCTATCTCCGGTTACCCTCGGTTGACTTTTCAAACCCTAAAGATCTGTTCACTTCCAGCTTCAAA TCCACAAATCCGAGATCTGGTGACTAAACGTGGAATCGCGGCCTCATTTTGTGCAGGTCAAACTTCAATCTCCTCTGGGTCTCATACGGCGTTACCGAAG TTCAGGTTCTCGATTTGCTGGTCTGACGTCTTACTTAATATGCTTGTTTTGGTCACAGATCTGAGCTTGGTTGGGTCGGATTTAGTTCTGTAA
AA sequence Show only first row Show all	>Lus10017122 pacid=23167485 polypeptide=Lus10017122 locus=Lus10017122.g ID=Lus10017122.BGIv1.0 annot-version=v1.0 MQGRSITISLSFGCRRLEPSIVDRVQRLTGRAPHVFLRRDVFFAHRDFDEILNAYEKGQKFYLYTGRGPSSEALQIGHLVPFMFTKYLQDAFKVPLVIQL TGDEKCVWKNLTVKESKRVAAIFGFKGEDLNGKFSFPSVQFSGKDDLRCLIPCAIDQDPYFRMTRDIAPRLGYHKPSLIESLLFPALQGEAGKRSASDPS SAIHVTDYAEVVRKKVNKYAFSGGQDSIEKHRELGANLEVDIPVKSLSFFLEDDAEFELIKTEYGAGRMLTGEVKQRLADVLTQLVDRHRAARAAVTEEM VDTFMAVRPLHNLVRHSKQKETLLPSSLLPFAAAPPHRSAVARDLSISGYPRLTFQTLKICSLPASNPQIRDLVTKRGIAASFCAGQTSISSGSHTALPK FRFSICWSDVLLNMLVLVTDLSLVGSDLVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04600			Nucleotidylyl transferase supe...		Lus10017122 [exp]	0	1
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	9.8	0.8796
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10039235 [exp]	9.8	0.8939
AT1G68820			Transmembrane Fragile-X-F-asso...		Lus10035057 [exp]	24.2	0.8900
AT5G66810			unknown protein		Lus10016766 [exp]	31.0	0.8775
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	34.2	0.8875
					Lus10022087 [exp]	47.9	0.8770
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	54.6	0.8759
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	71.8	0.8723
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	82.8	0.8468
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10027230 [exp]	112.7	0.8490

Compare expression of checked genes

Lus10017122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.