Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32070 447 / 1e-160 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 428 / 4e-153 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT5G10960 422 / 1e-150 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 352 / 1e-122 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G44260 285 / 2e-96 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 280 / 1e-94 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 166 / 3e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 129 / 1e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 122 / 1e-33 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 119 / 2e-31 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018330 [exp] 566 / 0 AT2G32070 444 / 3e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10003635 [exp] 428 / 5e-153 AT2G32070 435 / 6e-156 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036291 [exp] 427 / 1e-152 AT2G32070 432 / 9e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10034180 [exp] 293 / 9e-100 AT5G22250 410 / 4e-146 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10004212 [exp] 277 / 2e-93 AT3G44260 336 / 1e-116 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10021304 [exp] 275 / 2e-92 AT5G22250 335 / 8e-116 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016980 [exp] 271 / 5e-90 AT5G22250 332 / 8e-114 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 159 / 7e-47 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042746 [exp] 158 / 1e-46 AT5G10960 150 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262500 [exp] 496 / 1e-179 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 495 / 1e-179 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 475 / 1e-171 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 471 / 5e-170 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G187200 [exp] 397 / 1e-140 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 298 / 8e-102 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 287 / 2e-97 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 281 / 5e-95 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 276 / 1e-92 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 235 / 5e-77 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10017123 pacid=23167472 polypeptide=Lus10017123 locus=Lus10017123.g ID=Lus10017123.BGIv1.0 annot-version=v1.0 ATGTCGATCATGTCGAAAGGTGATGACTCTATCCATATTCGGGAGGTGTGGAATGACAATCTGGAAGAGGAATTCGCTTTGATTCGTGAGGTTGTTGACC TGTTCCCTTTTGTTGCGATGGATACTGAGTTCCCTGGTGTGGTCCTGCGACCTGTAGTGGTTTACAAGAACATCAATGATTACAACTACCTGACGTTGAA GGCTAATGTGGATATGCTGAAATTGATCCAGTTGGGGCTCACTTTCTCGGACGACAAGGGGAATTTACCCACTTGCGGAACCGATGATGATAGGTTCTGC ATTTGGCAGTTCAACTTCCGCGAGTTCAATGTCACCGAGGACATCTATGCTAGCGACTCGATTGAGCTGCTGCGCCAGTGCGGGATTGATTTCAAGAAGA ACAACGAAAGGGGTATCGACGTCAGCCGGTTTGGTGAGCTTCTGATGTCCTCAGGGATTGTGTTGAACTCTGAGGTGCATTGGGTTACTTTCCACAGTGG GTATGATTTCGGCTACTTACTCAAGCTCTTGACTTGCAAGAGCCTCCCGGACACTCAAGCTGGATTCTTCGACCTGATCAATATGTATTTCCCGATGGTG TATGACATCAAGCACTTGATGAAGTTCTGCAACAACCTCCATGGCGGCTTGAACAAACTCGCCGAGTTGCTGGAGGTTGAAAGAGTCGGTGTTTGCCATC AAGCCGGGTCGGATAGCTTGCTCACATCATGCACGTTTAGGAAGTTGAGGGATAATTACTTCAGTGGTTCAACAGAGAAGTATGCTGGTGTGTTGTATGG TCTTGGTATTGAGAATGGCCAAAATACTAATTGA
AA sequence Show only first row Show all	>Lus10017123 pacid=23167472 polypeptide=Lus10017123 locus=Lus10017123.g ID=Lus10017123.BGIv1.0 annot-version=v1.0 MSIMSKGDDSIHIREVWNDNLEEEFALIREVVDLFPFVAMDTEFPGVVLRPVVVYKNINDYNYLTLKANVDMLKLIQLGLTFSDDKGNLPTCGTDDDRFC IWQFNFREFNVTEDIYASDSIELLRQCGIDFKKNNERGIDVSRFGELLMSSGIVLNSEVHWVTFHSGYDFGYLLKLLTCKSLPDTQAGFFDLINMYFPMV YDIKHLMKFCNNLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDNYFSGSTEKYAGVLYGLGIENGQNTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	1.4	0.9603
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	4.0	0.9497
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	4.0	0.9464
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	6.0	0.9477
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	9.5	0.9438
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	10.6	0.9358
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	11.6	0.9265
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10036823 [exp]	11.8	0.9398
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	12.5	0.9294
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	13.4	0.9344

Compare expression of checked genes

Lus10017123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.