Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19810 260 / 1e-83 ChiC class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19800 250 / 8e-80 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19820 237 / 4e-75 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19750 216 / 5e-67 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19720 215 / 1e-66 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19760 210 / 1e-64 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19770 190 / 5e-58 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT4G19730 177 / 2e-52 Glycosyl hydrolase superfamily protein (.1) AT4G19740 116 / 2e-30 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018329 [exp] 647 / 0 AT4G19810 268 / 1e-86 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019060 [exp] 244 / 8e-75 AT4G19810 437 / 1e-149 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036311 [exp] 237 / 8e-75 AT4G19810 377 / 5e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036306 [exp] 218 / 2e-67 AT4G19810 397 / 6e-138 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036315 [exp] 172 / 9e-50 AT4G19820 253 / 3e-81 Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019061 [exp] 173 / 1e-47 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10036310 [exp] 157 / 3e-45 AT4G19810 277 / 3e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10040021 [exp] 155 / 3e-42 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10024081 [exp] 153 / 1e-40 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261800 [exp] 405 / 4e-139 AT4G19810 286 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G262001 [exp] 399 / 9e-138 AT4G19810 283 / 2e-92 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112000 [exp] 333 / 3e-112 AT4G19810 284 / 3e-93 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G112100 [exp] 332 / 7e-112 AT4G19810 279 / 3e-91 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188400 [exp] 245 / 4e-78 AT4G19810 477 / 2e-169 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.006G188300 [exp] 239 / 6e-76 AT4G19810 379 / 2e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.018G111700 [exp] 184 / 1e-51 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111900 [exp] 177 / 4e-49 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111800 [exp] 176 / 6e-49 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111600 [exp] 168 / 7e-46 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10017124 pacid=23167427 polypeptide=Lus10017124 locus=Lus10017124.g ID=Lus10017124.BGIv1.0 annot-version=v1.0 ATGGCATCCTTCACACTGACGTTTTCAATCATTCTTCTCTTCTTCTTCAACGCCATGCTCAACACCAATTCCCAAACCATCCCTCCAACTTCAACCCCAT CTCCTTCCCCCATTCCTCCACCGCCGGCGTCGGACATAATCAGAGCAGCTTACTGGGAATCGTTCTCCGACTTCCCGGCCTCTTCAATCAACACTTCTCA CTTCACCCACGTATACTACGCCTTCCTCCTGCTCAAACCCACCACATTCGAGCTCAACATCACCGATTCCGACAAAATCAAACTCCCCCAGTTCACATCA TCCCTCTCCGGCCGAACCCCGCCGGTGAAAACCCTGCTCTCCATCGGCGGCGCTTTCCCGATCTCCATCGCCCAGGTGTTCGCCGAAATGGCCAAGTCGC GAAAATCCCGCGCCGTGTTTATCCTGTCGGCAATTCGAACGGCGAGGAAATACGGATTCGACGGACTCGACATTGACTGGGAATATCCAGTCAGCTCCGT CGAGATGCGAAACTACGCCGTCTTGCTCAGAGAATGCCGGCGGGCTGTAGAATTCGAATCTGTAATCACCGCAAGGCCTTCCCTGCTTTTAACCTCCGCC GTTTACTACGCTGCGAAAATCGAGAATTCAGGGGAGGTCCGGGTTTATCCGGTTCGGGATATGGATAAGTATTTGGATTGGGTTAACCCGATGACTTACG ATTATAACGGGGCCTGGATCAATATTACTGGGCCTAACGCGGCCCTGTTCGATAACGTGGGTAAGTTGAGCACTGCGTACGGTATCCAGTCGTGGATAGA TGCGGGTGTTTCGGGTCGGAAGCTGGTTTTGGGTCTGCCCTTGTATGGACGGACGTGGACCTTGGAGGATCCGAATGTTAACGGGATCGGGTCGAGAGCG GTGGCGGCGGGACCCGGCGGTGGATACTTGGGGTTCGATGATGTTCTGGTGTGGAATGCGGAGAACAAAGCGACCGTCGTTTATGATGGTGAGACTGTAT CGTACTACTCGTTTGCGAACGGTTCATGGGTTGGGTACGATGATACGGTGTCGATTGATTTGAAGATCCCGTTTGCTCAGACTAAAGGGCTTGGCGGGTA TTTCTTTTGGGCTTTGGGCCAGGATAGGATCGCGGCTATCCCGAAAATAGCTTCACTTGCGTGGTAA
AA sequence Show only first row Show all	>Lus10017124 pacid=23167427 polypeptide=Lus10017124 locus=Lus10017124.g ID=Lus10017124.BGIv1.0 annot-version=v1.0 MASFTLTFSIILLFFFNAMLNTNSQTIPPTSTPSPSPIPPPPASDIIRAAYWESFSDFPASSINTSHFTHVYYAFLLLKPTTFELNITDSDKIKLPQFTS SLSGRTPPVKTLLSIGGAFPISIAQVFAEMAKSRKSRAVFILSAIRTARKYGFDGLDIDWEYPVSSVEMRNYAVLLRECRRAVEFESVITARPSLLLTSA VYYAAKIENSGEVRVYPVRDMDKYLDWVNPMTYDYNGAWINITGPNAALFDNVGKLSTAYGIQSWIDAGVSGRKLVLGLPLYGRTWTLEDPNVNGIGSRA VAAGPGGGYLGFDDVLVWNAENKATVVYDGETVSYYSFANGSWVGYDDTVSIDLKIPFAQTKGLGGYFFWALGQDRIAAIPKIASLAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	0	1
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	1.0	0.9743
AT5G47700			60S acidic ribosomal protein f...		Lus10033403 [exp]	2.4	0.9204
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	4.2	0.9150
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	4.9	0.9108
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10002527 [exp]	9.8	0.8325
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	10.5	0.8698
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10010942 [exp]	11.0	0.8492
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	11.5	0.8650
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	13.3	0.8534
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	14.8	0.8565

Compare expression of checked genes

Lus10017124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.