Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25160 92 / 7e-23 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 89 / 1e-21 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 71 / 3e-15 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G24625 69 / 2e-14 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G66140 69 / 3e-14 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT5G57520 64 / 4e-13 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G67030 62 / 4e-12 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT3G58070 62 / 7e-12 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G14010 61 / 7e-12 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G41940 59 / 1e-10 C2H2ZnF ZFP8 zinc finger protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018328 [exp] 252 / 2e-86 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10013243 [exp] 72 / 6e-15 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 72 / 7e-15 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10014350 [exp] 68 / 5e-14 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10003681 [exp] 68 / 6e-14 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10028997 [exp] 66 / 1e-13 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10025471 [exp] 65 / 3e-13 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10006960 [exp] 61 / 6e-12 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10010388 [exp] 61 / 2e-11 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180600 [exp] 84 / 2e-19 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G021400 [exp] 82 / 5e-19 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G261700 [exp] 81 / 1e-18 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G047500 [exp] 75 / 3e-16 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G102700 [exp] 71 / 7e-15 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.008G138000 [exp] 70 / 1e-14 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.017G134800 [exp] 70 / 1e-14 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.004G084100 [exp] 70 / 2e-14 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1) Potri.016G028100 [exp] 64 / 6e-13 AT5G10970 78 / 2e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.004G097900 [exp] 64 / 1e-12 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017125 pacid=23167439 polypeptide=Lus10017125 locus=Lus10017125.g ID=Lus10017125.BGIv1.0 annot-version=v1.0 ATGGAATCAGTCAGTGATCATCAGCCAACTAATAAGAAGCGCAAGGAAGAACTCAACCTCATCGACTGCTTGGACACTGGTACTAGTTCGCAGGAGAGGG CAAAGTTCAGTTGTAATTACTGCAACAGGGAATTCTACAGCTCACAAGCACTCGGAGGACATCAGAATGCTCACAAGCGAGAGCGGTGTCTCGCTAAAAG AGGCCTTATGATGATCACCAGGAGGGTGAATAGTACTGCTGCTTCTTCTTACTATCACCCTTCCACTTTTCATAATTCTTGGCACCGTTATGGCACATCT CATTTTGCAGTCCAGCCCCACTCTCTTCCTCATAACAACCCTCCTCCTCTTTCGTCTTCTCATGGAAGCCGGTCAACCTGCAGGCTACCTGCTGCTGCTG CTAGTCACCAAGGGCTGCTACAGCCTTGTGGGTTCGGAAAGCTTACCAATTCTATTATGCAACTTCAACCCCCAACACCACCATCACCGCCGCTGTCACC TGTATCAAATAGAAGCAGCAAGTATAGTTCGCAGAAGCTTGATTTAGCACTCAGGCTCTAG
AA sequence Show only first row Show all	>Lus10017125 pacid=23167439 polypeptide=Lus10017125 locus=Lus10017125.g ID=Lus10017125.BGIv1.0 annot-version=v1.0 MESVSDHQPTNKKRKEELNLIDCLDTGTSSQERAKFSCNYCNREFYSSQALGGHQNAHKRERCLAKRGLMMITRRVNSTAASSYYHPSTFHNSWHRYGTS HFAVQPHSLPHNNPPPLSSSHGSRSTCRLPAAAASHQGLLQPCGFGKLTNSIMQLQPPTPPSPPLSPVSNRSSKYSSQKLDLALRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10017125 [exp]	0	1
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	4.6	0.7288
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10041259 [exp]	12.4	0.6948
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	21.1	0.7302
AT2G19940			oxidoreductases, acting on the...		Lus10034096 [exp]	22.2	0.7014
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024448 [exp]	23.2	0.7178
AT2G28430			unknown protein		Lus10022580 [exp]	40.5	0.7056
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	41.5	0.6562
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10017584 [exp]	43.9	0.7021
AT3G16640		TCTP	translationally controlled tum...		Lus10033959 [exp]	50.2	0.7163
AT4G10265			Wound-responsive family protei...		Lus10004297 [exp]	53.7	0.6905

Compare expression of checked genes

Lus10017125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.