Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31930 219 / 7e-72 Mitochondrial glycoprotein family protein (.1) AT1G80720 169 / 4e-53 Mitochondrial glycoprotein family protein (.1) AT1G15870 167 / 2e-51 Mitochondrial glycoprotein family protein (.1) AT3G55605 88 / 6e-21 Mitochondrial glycoprotein family protein (.1) AT5G02050 83 / 7e-19 Mitochondrial glycoprotein family protein (.1) AT5G05990 79 / 2e-17 Mitochondrial glycoprotein family protein (.1) AT2G39795 77 / 5e-17 Mitochondrial glycoprotein family protein (.1) AT4G32605 57 / 1e-09 Mitochondrial glycoprotein family protein (.1) AT2G39790 53 / 3e-08 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018327 [exp] 414 / 8e-149 AT4G31930 243 / 2e-81 Mitochondrial glycoprotein family protein (.1) Lus10026060 [exp] 174 / 5e-54 AT1G15870 263 / 4e-89 Mitochondrial glycoprotein family protein (.1) Lus10014351 [exp] 94 / 1e-24 AT1G80720 122 / 1e-36 Mitochondrial glycoprotein family protein (.1) Lus10024351 [exp] 95 / 3e-23 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10030157 [exp] 88 / 6e-21 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 87 / 1e-20 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10012653 [exp] 82 / 4e-19 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 77 / 2e-17 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1) Lus10043448 [exp] 55 / 7e-09 AT4G32605 264 / 1e-89 Mitochondrial glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G021600 [exp] 268 / 3e-91 AT4G31930 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Potri.001G047600 [exp] 178 / 8e-56 AT1G15870 256 / 2e-86 Mitochondrial glycoprotein family protein (.1) Potri.006G090700 [exp] 84 / 1e-19 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.016G102200 [exp] 83 / 6e-19 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 81 / 3e-18 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1) Potri.010G198600 [exp] 76 / 2e-16 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.006G261601 [exp] 71 / 4e-15 AT4G31930 79 / 3e-18 Mitochondrial glycoprotein family protein (.1) Potri.010G244500 [exp] 54 / 2e-08 AT4G32605 242 / 3e-81 Mitochondrial glycoprotein family protein (.1) Potri.008G015600 [exp] 52 / 1e-07 AT4G32605 262 / 2e-88 Mitochondrial glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10017126 pacid=23167402 polypeptide=Lus10017126 locus=Lus10017126.g ID=Lus10017126.BGIv1.0 annot-version=v1.0 ATGGCTTCCACCTTATTCCAAATAGCACAGAGATCTCTAGCTTCTCATCGGACTTCTACTCTACATCTAATAAAGCCGGCCATCGCTTCTTCTTTCTTCC AATCCCGAGCTGCCAAATCGCGTTCCGAAGCCAACATTCTCAGAATCATCGACAACGAGGTCGATTACCAGTCCGAATACGCCCCTCCGCACAAGCCTGC GGAGAAATTCGATTCGTTCGCGGTGCAAGACCGACCAGGCCAGCAGTGGATGACCATGACGAGGAGATTCGCCGACGCTGAAGACGTTAAAATTGAAGCC ACGATGTTTGATGGTTACGAACTTGTACCGAAGCCCGGAGAAGATAGCTCCGGGGAGAACGTGCGTCTTCATATCAGCTTACTCGTCGACGTATCCAAAG TCGATGATGATGGTGGAAACAGCAAGTTGGAGTTCGTTTGCTCGGCGTGGCCAGATCGTTTGGAGATTCAGAAAGTTTATCTGCTTCGTGGAGATAAATC GCTTGGGAGGCCTTACATGGGCCCTGATTTCCGGAGTTTGAGTGGCGAGCTTCAGAAAGGATTAAGCAGCTTCTTGGAGGAAAGAGGGGTAAATGATAGG CTTTCGTTTTTCTTGCATGAGTACATCTCGAACAAAGATAGGATTGAACTTATTCAATGGTTGGAAAGGGTTAAATCGTTTGTTGAAAACTAG
AA sequence Show only first row Show all	>Lus10017126 pacid=23167402 polypeptide=Lus10017126 locus=Lus10017126.g ID=Lus10017126.BGIv1.0 annot-version=v1.0 MASTLFQIAQRSLASHRTSTLHLIKPAIASSFFQSRAAKSRSEANILRIIDNEVDYQSEYAPPHKPAEKFDSFAVQDRPGQQWMTMTRRFADAEDVKIEA TMFDGYELVPKPGEDSSGENVRLHISLLVDVSKVDDDGGNSKLEFVCSAWPDRLEIQKVYLLRGDKSLGRPYMGPDFRSLSGELQKGLSSFLEERGVNDR LSFFLHEYISNKDRIELIQWLERVKSFVEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31930			Mitochondrial glycoprotein fam...		Lus10017126 [exp]	0	1
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	3.0	0.8173
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	6.3	0.8037
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	12.8	0.7477
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10015898 [exp]	15.4	0.7060
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	16.0	0.7258
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10027008 [exp]	16.2	0.6726
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10015604 [exp]	18.2	0.7238
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	19.6	0.7348
AT5G24510			60S acidic ribosomal protein f...		Lus10008944 [exp]	28.6	0.6985
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10004362 [exp]	29.0	0.6925

Compare expression of checked genes

Lus10017126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.