Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25170 291 / 6e-101 PPPDE putative thiol peptidase family protein (.1) AT2G25190 269 / 7e-92 PPPDE putative thiol peptidase family protein (.1) AT4G31980 263 / 2e-84 unknown protein AT1G80690 242 / 1e-81 PPPDE putative thiol peptidase family protein (.1) AT1G47740 223 / 2e-73 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 209 / 2e-68 PPPDE putative thiol peptidase family protein (.1) AT4G17486 204 / 1e-66 PPPDE putative thiol peptidase family protein (.1.2) AT4G25680 97 / 2e-24 PPPDE putative thiol peptidase family protein (.1) AT4G25660 96 / 5e-24 PPPDE putative thiol peptidase family protein (.1) AT3G07090 62 / 2e-11 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018326 [exp] 390 / 2e-140 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10005341 [exp] 319 / 3e-112 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 312 / 2e-109 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10042454 [exp] 246 / 1e-82 AT1G80690 265 / 1e-89 PPPDE putative thiol peptidase family protein (.1) Lus10026215 [exp] 244 / 1e-81 AT1G80690 265 / 8e-90 PPPDE putative thiol peptidase family protein (.1) Lus10032708 [exp] 223 / 9e-74 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 221 / 6e-73 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10040485 [exp] 216 / 7e-71 AT1G47740 272 / 6e-92 PPPDE putative thiol peptidase family protein (.1.2) Lus10011291 [exp] 214 / 2e-70 AT1G47740 270 / 3e-91 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261500 [exp] 300 / 3e-104 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 297 / 3e-103 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 259 / 2e-88 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 253 / 7e-86 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.014G042300 [exp] 233 / 2e-77 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 231 / 4e-77 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 225 / 2e-74 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 221 / 4e-73 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 221 / 6e-73 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 214 / 2e-70 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10017127 pacid=23167396 polypeptide=Lus10017127 locus=Lus10017127.g ID=Lus10017127.BGIv1.0 annot-version=v1.0 ATGTTGCCGAATAAGAAGAAGAAGGCGGGTACGGTGCCGGTTTACTTGAATGTTTATGATTTGACTCCCATGAATGGCTACGCTTACTGGGTCGGCCTTG GAATCTACCACTCTGGCGTCCAAGTTCACGGAGTTGAATATGGTTTTGGAGCTCATGATCGTTCAACCACCGGGGTTTTCGAGGTTGAACCGAAGCAGTG CCCTGGTTTCACTTTCAGGAAATCGATACTCATCGGCAGAACTGATCTCGGTACGAAAGAAGTTCGTTCGATGATGGAGAAACTGGCCAAAGAGTATTCT GGGAATACCTACCACCTTATCACTAAGAACTGCAATCACTTCTGCAATGATGCCTGTGTCAAGCTAACTGCGAAATCCATTCCCAGCTGGGTTAACCGGC TTGCTCGATTAGGTTTCCTTTGCAACTGCGTCCTTCCGGCAGAGCTGAATGGAGCGAAAGTGCGGCAAGTAAGATCGGGGGAGAGGGTGCAGCAAGTAGA GAAGAAGAAGTTAAGGAGCCGTTCGAGTAGATTTGCATCTGCAACAACCAACACACCTACATTATCAAAAACTGCTTCAGGTTCTGCAATCAGTAGTCGT TCTGGACAGAACTTGTGA
AA sequence Show only first row Show all	>Lus10017127 pacid=23167396 polypeptide=Lus10017127 locus=Lus10017127.g ID=Lus10017127.BGIv1.0 annot-version=v1.0 MLPNKKKKAGTVPVYLNVYDLTPMNGYAYWVGLGIYHSGVQVHGVEYGFGAHDRSTTGVFEVEPKQCPGFTFRKSILIGRTDLGTKEVRSMMEKLAKEYS GNTYHLITKNCNHFCNDACVKLTAKSIPSWVNRLARLGFLCNCVLPAELNGAKVRQVRSGERVQQVEKKKLRSRSSRFASATTNTPTLSKTASGSAISSR SGQNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25170			PPPDE putative thiol peptidase...		Lus10017127 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	4.5	0.6694
AT2G31230	AP2_ERF	ATERF15	ethylene-responsive element bi...		Lus10022935 [exp]	5.5	0.6601
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	9.7	0.6910
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	10.4	0.6974
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	16.9	0.5687
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10016629 [exp]	24.8	0.6531
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	27.3	0.6896
AT1G06510			unknown protein		Lus10031457 [exp]	28.9	0.6005
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10003504 [exp]	31.3	0.6140
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	35.6	0.6548

Compare expression of checked genes

Lus10017127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.