Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11000 221 / 2e-69 Plant protein of unknown function (DUF868) (.1) AT2G25200 162 / 7e-47 Plant protein of unknown function (DUF868) (.1) AT5G28150 146 / 1e-41 Plant protein of unknown function (DUF868) (.1) AT3G04860 139 / 7e-39 Plant protein of unknown function (DUF868) (.1) AT2G04220 137 / 5e-38 Plant protein of unknown function (DUF868) (.1) AT4G12690 130 / 1e-35 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT3G13229 120 / 1e-31 Plant protein of unknown function (DUF868) (.1) AT5G48270 120 / 2e-31 Plant protein of unknown function (DUF868) (.1) AT2G27770 107 / 2e-26 Plant protein of unknown function (DUF868) (.1) AT2G36470 71 / 1e-13 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001787 [exp] 164 / 2e-48 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 161 / 3e-47 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 145 / 1e-40 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10041022 [exp] 139 / 1e-39 AT5G11000 159 / 4e-47 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 142 / 3e-39 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10005342 [exp] 133 / 2e-37 AT5G11000 154 / 3e-45 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 130 / 5e-35 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 127 / 5e-34 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 121 / 1e-31 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261300 [exp] 263 / 1e-85 AT5G11000 295 / 3e-97 Plant protein of unknown function (DUF868) (.1) Potri.018G021800 [exp] 260 / 2e-84 AT5G11000 278 / 2e-90 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 162 / 1e-47 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 160 / 1e-46 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 155 / 6e-45 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 151 / 2e-43 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 132 / 1e-35 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.012G089100 [exp] 128 / 2e-34 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.013G036400 [exp] 123 / 2e-32 AT3G04860 137 / 3e-38 Plant protein of unknown function (DUF868) (.1) Potri.005G050000 [exp] 123 / 3e-32 AT3G04860 131 / 9e-36 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10017128 pacid=23167489 polypeptide=Lus10017128 locus=Lus10017128.g ID=Lus10017128.BGIv1.0 annot-version=v1.0 ATGTCGCAATCCTCCCCATTTCCAGCTTGTTTCCGCCCTTCCTCCGCCGCCGCTTCCGACGCCAACCACCACCACCACCACCGTCCGCCTTCTCCCCCTC CGCCGCCCCCGCCGCCACTCTCCTCTGGCAAGCCCAACCTCGCAACCTCCTACTACCAAACGGAACTCGGCGTTTTCTCCCTCGCCTGGTCCAGCACCTT CCTCGGCCACTCCCTCCACCTCAACCTCCAAAACCACGACGGATTCTCCACCTCTTCCTCCCTCTCTTTCCATCTCCACATCAAGCCATTCGTCTTCTGG AAGAAACACGGCTCCAAACGCCTGATCCCTCATCCGGACGGTGCCGATCTTGCCGCCCCTAAGTTCCAGATCTACTGGGATCTCTCCCGGGCAAAGTTCG GATCCGGACCCGAACCGAAGTCCGGATTCTACATCGCCGTCGTGGCCGATCGGGAGATTGTCCTCCTCGTCGGGGACTTGACTCGTGAGACTTGGGGGAA GATCAAGGCCCGGCGGCGGCCTGGGCGGAGGAGGACGAACGGCGGAGGCGGCGGCGGGATACAGTCCCTAGTTTCGAGAAAGGAGCACGTGTTTGGCAAC AGAGTTTACACCACCAGAGCCAGATTCGGTGGGAGAAACAGACAGATTACGATCGATTGCAGCGAGGGAAAGCTCAATTTCGCGGTGGATAGCAAGAAGG TTCTGCAGATCAAGCGGTTGAAGTGGAAGTTTCGTGGCAACGAGCGAATCGAGGTCGACGGGATTCCGATTCAGATCTCGTGGGACGTTTACAATTGGCT GTTTGACGCCGACGGAAACAGCAGCAGTAACGGAAACAGTAAAGGGGAGAGGAGCTCGTCGTGGTCGTCGGTGTCGATGTCGTCGGTGTCGTCGTCGATG GGGACGAATACGTCGGTAATGGAGTGGGCCAGCGTGGAAGAAAGCGAGTTGGGCTGTGGGCCTGACGGCTTCACCTTGCTGGTTTATGCCTGGAAGAAGT AA
AA sequence Show only first row Show all	>Lus10017128 pacid=23167489 polypeptide=Lus10017128 locus=Lus10017128.g ID=Lus10017128.BGIv1.0 annot-version=v1.0 MSQSSPFPACFRPSSAAASDANHHHHHRPPSPPPPPPPPLSSGKPNLATSYYQTELGVFSLAWSSTFLGHSLHLNLQNHDGFSTSSSLSFHLHIKPFVFW KKHGSKRLIPHPDGADLAAPKFQIYWDLSRAKFGSGPEPKSGFYIAVVADREIVLLVGDLTRETWGKIKARRRPGRRRTNGGGGGGIQSLVSRKEHVFGN RVYTTRARFGGRNRQITIDCSEGKLNFAVDSKKVLQIKRLKWKFRGNERIEVDGIPIQISWDVYNWLFDADGNSSSNGNSKGERSSSWSSVSMSSVSSSM GTNTSVMEWASVEESELGCGPDGFTLLVYAWKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	0	1
					Lus10039441 [exp]	1.0	0.9214
AT4G32020			unknown protein		Lus10001936 [exp]	3.2	0.8953
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	7.3	0.8686
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10035231 [exp]	10.4	0.8466
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	10.4	0.8030
AT4G32020			unknown protein		Lus10001940 [exp]	11.2	0.8531
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	11.5	0.8465
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	11.8	0.8423
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	12.0	0.8432
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	14.1	0.8094

Compare expression of checked genes

Lus10017128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.