Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31130 353 / 5e-122 unknown protein AT4G19950 341 / 4e-117 unknown protein AT5G44860 316 / 2e-107 unknown protein AT4G16850 41 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018322 [exp] 513 / 0 AT4G19950 417 / 3e-147 unknown protein Lus10036220 [exp] 219 / 2e-70 AT5G44860 265 / 3e-89 unknown protein Lus10038358 [exp] 142 / 3e-42 AT4G19950 183 / 1e-58 unknown protein Lus10018940 [exp] 149 / 4e-42 AT1G31130 231 / 8e-74 unknown protein Lus10028643 [exp] 142 / 3e-39 AT1G31130 228 / 1e-72 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125600 [exp] 358 / 1e-123 AT1G31130 327 / 7e-112 unknown protein Potri.012G125800 [exp] 340 / 8e-117 AT5G44860 396 / 4e-139 unknown protein Potri.007G105600 [exp] 191 / 2e-58 AT4G19950 179 / 7e-54 unknown protein Potri.005G186200 [exp] 177 / 4e-53 AT4G19950 185 / 3e-56 unknown protein Potri.007G105700 [exp] 177 / 6e-53 AT4G19950 182 / 4e-55 unknown protein Potri.002G074200 [exp] 122 / 3e-32 AT1G31130 128 / 3e-34 unknown protein Potri.005G184600 [exp] 69 / 4e-13 AT4G19950 133 / 3e-36 unknown protein Potri.010G163400 [exp] 42 / 0.0003 AT1G26650 453 / 1e-160 unknown protein Potri.018G097900 [exp] 42 / 0.0005 AT4G16850 162 / 9e-48 unknown protein Potri.008G091500 [exp] 41 / 0.001 AT1G26650 401 / 3e-140 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017130 pacid=23167470 polypeptide=Lus10017130 locus=Lus10017130.g ID=Lus10017130.BGIv1.0 annot-version=v1.0 ATGGATCGACCACCGGAAGAACTCCAATTCCTCTCTGTACCGGAAATCCTAAAGCAATCGATCTCAATCCCAAAGCAATCCCCCAAAACATTTTCCCTCA TAACCCTAACCTTAATCTTCCCTCTCTCCTTCGCAATCCTAGCACATTCCCTCTTCACCCACCCAATCATCGCCCAGATCGAGAACACACCCGACCCGGA CGACGACTCCGACCCGACCGTCGCCCGCTACGAGTGGACCCTCCTCATCTTCCAATTCTGGTACTCAATCTTCCTCTTCGCATTCTCACTCCTCTCCACC GCCGCCGTCGTTTTCACCGTCGCCTCCCTCTACACAGCCAAGCCCGTCTCCTTCTCCTCCACCGCCGCCGCGATCCCCAAGCTCTTCAAGCGCCTCTTCG TCACCTTCTTCTTCGTCGCGCTCCTCATGTTCCTCTACAACGCCGTCTTCCTCATCGTCCTCGTGATCTTCGTCATCGTGATCGACACCTCCGCCACCGC CGATCAGAGCCCCGGCCTCATCCTGTTCGCCCTCCTAATCGTGTTCGCCGTCTTCCTCGCCGTACACGTGTACATCACCGCTCTATGGCACCTGGCCAGC GTCGTCTCCGTTTTAGAACCGGTCTACGGATTCGCCGCCATGAAAAAGAGCTACGAGCTGCTCAGGGGGAAAACAGGAGCCGCATTCGTGATGGTGTTTA TGTATCTGATGATCTGTGGGATGGTGAATACCGTTTTCGGGTCGATTGTTGTCCATGGCGGGTTGGATTACACGCTGGTGGCCAGGATTGTGGTGGGTGG GTCACTGGTTGGGGTTTTGGTGGTTATGAATGTAGTTGGATTGCTGGTTCAGAGCGTGTTTTACTATGTATGCAAGAGCTATCATAACCAAGGGATTGAT AAGATGGCTTTGCATGATCAGCTGGGTGAGTATCTGGGTGAGTATGTTCCTCTCAAGAGCAACATTCAACTGGAGAACTTGAATGTTGATACTTGA
AA sequence Show only first row Show all	>Lus10017130 pacid=23167470 polypeptide=Lus10017130 locus=Lus10017130.g ID=Lus10017130.BGIv1.0 annot-version=v1.0 MDRPPEELQFLSVPEILKQSISIPKQSPKTFSLITLTLIFPLSFAILAHSLFTHPIIAQIENTPDPDDDSDPTVARYEWTLLIFQFWYSIFLFAFSLLST AAVVFTVASLYTAKPVSFSSTAAAIPKLFKRLFVTFFFVALLMFLYNAVFLIVLVIFVIVIDTSATADQSPGLILFALLIVFAVFLAVHVYITALWHLAS VVSVLEPVYGFAAMKKSYELLRGKTGAAFVMVFMYLMICGMVNTVFGSIVVHGGLDYTLVARIVVGGSLVGVLVVMNVVGLLVQSVFYYVCKSYHNQGID KMALHDQLGEYLGEYVPLKSNIQLENLNVDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19950			unknown protein		Lus10017130 [exp]	0	1
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10031027 [exp]	4.1	0.8329
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	5.5	0.7890
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	5.8	0.8192
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	17.0	0.7821
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028557 [exp]	17.6	0.8187
AT5G51740			Peptidase family M48 family pr...		Lus10031682 [exp]	21.4	0.8154
AT2G24370			Protein kinase protein with ad...		Lus10020185 [exp]	25.2	0.6041
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	25.7	0.7528
AT5G08060			unknown protein		Lus10034681 [exp]	26.6	0.7502
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	29.6	0.6904

Compare expression of checked genes

Lus10017130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.