Plant FIBer expression Database

Lus10017131 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05010 739 / 0 clathrin adaptor complexes medium subunit family protein (.1.2)
AT5G40855 68 / 4e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018321
[exp]
919 / 0 AT5G05010 687 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G125400
[exp]
825 / 0 AT5G05010 774 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2)
Potri.012G125500
[exp]
803 / 0 AT5G05010 740 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2)
Potri.001G293150
[exp]
87 / 2e-20 AT5G05010 68 / 1e-14 clathrin adaptor complexes medium subunit family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0448 Cargo_bd_muHD PF00928 Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence
>Lus10017131 pacid=23167385 polypeptide=Lus10017131 locus=Lus10017131.g ID=Lus10017131.BGIv1.0 annot-version=v1.0
ATGTCGCTGGCGAGAAGAAACGCAGCACTTTTCCCTTTGGCAATTCAGGGGAGAAGCACTGAAATCAGTAGATCCAATCTTCCCAAGGTTGTTCTTGCAG
CGTCTATTGTGACAAAGTCCGGGAAAGTTCTTGTCTCTAGGCAGTTTGTGGATATGACCCGTATAAGGATTGAAGGTCTTCTTGCCGCATTCCCAAAGTT
GGTGGGCACGGGAAAGCAGCATACATATGTGGAGACCGAGAATGTACGCTATGTTTATCAGCCAATAGAGCTTATGTACTTATTGCTTGTGACAAATAAA
CAAAGCAATATTCTTGAAGATTTGGAAACTCTTCGGCTCCTCTCTAAGCTTGTACCTGAGTATGCTATGTCTCTTGATGAGGAGGGTATTACGAAGACAG
CCTTTGAGTTGATTTTTGCTTTTGATGAGGTCATCTCCCTTGGGCACAAGGAAAATGTTACTGTTGCACAGGTTAAGCAATACTGTGAGATGGAAAGTCA
TGAAGAGAAATTGCACAAACTGGTACTGCAGAGTAAGATTAATGAAACAAAGGACGTGATGAAGCGTAAAGCTAGTGAAATTGACAAAAGCAAGCTTGAG
AAAAATAGGGGTGAAAAGGGTGGTTTTATGTCATTGCAATCAATGGGTTCTGGAGGAAGAATCGAGAGTAGCTTCAATGATATGAATATTTCTAGCAGTG
GAAGTGGTTTTGGAAGTGGTTCTGGGTTTGGGTTGACCACTGATGTTGACTCGTTCTCCAGCAAATCAAAAGCTCGTCCATCTTCAGCAGCTACTGCGCC
TGCTAAAGGTCTTGGCATGAAGCTTGGTAAAACTCAAAGAACAAACCAGTTCTTAGAGTCTTTGAAGGCAGAAGGTGAAGTCATCATCGAAGATGTGCAA
CCAAGAGCAGGCCAATCAGGAGCTGCTGCTGCACCACCTACTGATCCAATCACTCTGACTGTTGAGGAGAAGCTGAATGTAACTCTAAAACGTGATGGTG
GAATAAGCAGCTTTGATGTGCAGGGGCAATTGACACTTCAGGTCCTTAACCAGGACGATGGGCTGATTCAAGTTCAGATCGAAACTGGAGGGGACCCTGG
GAAGATCCAATTCAAGACTCACCCTAACATGAGCAAGGAGTTATTTGCCAATGAAAATACTCTGGGCTCGAAGGACCCGAATAGGCCTTTTCCTGCTGGT
ACCGGTGTTGGTCTTTTGAAGTGGAGAATGAGTGGAGATGAATCTAAGGTGCCACTAACAATTAACTGCTGGCCGTCTGTGTCCGGAAATGAAACATATG
TCAGCATTGAATATGAAGCTTCAGACATGTTTGACCTCCGGAATGTGCTGATCTCGGTACCTCTTCCAGCTCTTAGGGAGGCACCCAGTGTCAGACAGAT
AGATGGAGAATGGAGGTACGATTCCAGAAACTCTGTCCTGGAATGGTCTATTCTTCTCATCGATGACTCCAACCGCAGCGGATCAATGGAGTTTGTGGTA
CCCGCATCAGATTCATCAGCTTTTTTTCCCATCGCTGTCCGATTCTCAGCTGCCAACACATTCAGTGATTTGAAGGCTGCAAGTATCATTCCACTCAAAG
GCGGAGTACCTCCCAAATACTCCCAGAGGACGCAAATGATCACCGACAATTACCAAGTAGTCTGA
AA sequence
>Lus10017131 pacid=23167385 polypeptide=Lus10017131 locus=Lus10017131.g ID=Lus10017131.BGIv1.0 annot-version=v1.0
MSLARRNAALFPLAIQGRSTEISRSNLPKVVLAASIVTKSGKVLVSRQFVDMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIELMYLLLVTNK
QSNILEDLETLRLLSKLVPEYAMSLDEEGITKTAFELIFAFDEVISLGHKENVTVAQVKQYCEMESHEEKLHKLVLQSKINETKDVMKRKASEIDKSKLE
KNRGEKGGFMSLQSMGSGGRIESSFNDMNISSSGSGFGSGSGFGLTTDVDSFSSKSKARPSSAATAPAKGLGMKLGKTQRTNQFLESLKAEGEVIIEDVQ
PRAGQSGAAAAPPTDPITLTVEEKLNVTLKRDGGISSFDVQGQLTLQVLNQDDGLIQVQIETGGDPGKIQFKTHPNMSKELFANENTLGSKDPNRPFPAG
TGVGLLKWRMSGDESKVPLTINCWPSVSGNETYVSIEYEASDMFDLRNVLISVPLPALREAPSVRQIDGEWRYDSRNSVLEWSILLIDDSNRSGSMEFVV
PASDSSAFFPIAVRFSAANTFSDLKAASIIPLKGGVPPKYSQRTQMITDNYQVV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G05010 clathrin adaptor complexes med... Lus10017131
[exp]
0 1
AT1G30630 Coatomer epsilon subunit (.1) Lus10038422
[exp]
1.0 0.9456
AT2G17980 ATSLY1 Sec1/munc18-like (SM) proteins... Lus10023936
[exp]
3.2 0.9391
AT1G80690 PPPDE putative thiol peptidase... Lus10026215
[exp]
3.3 0.9151
AT1G72480 Lung seven transmembrane recep... Lus10008125
[exp]
4.2 0.9349
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Lus10042497
[exp]
4.9 0.9343
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Lus10022559
[exp]
6.7 0.9335
AT2G25800 Protein of unknown function (D... Lus10008431
[exp]
7.5 0.8701
AT3G12110 ACT11 actin-11 (.1) Lus10004956
[exp]
7.7 0.9284
AT3G07950 rhomboid protein-related (.1) Lus10041408
[exp]
8.0 0.9279
AT1G63000 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-... Lus10006719
[exp]
8.4 0.9279

Lus10017131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.