Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50170 129 / 6e-32 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 124 / 3e-30 Plant protein of unknown function (DUF247) (.1) AT2G36430 118 / 9e-29 Plant protein of unknown function (DUF247) (.1) AT3G50140 115 / 2e-27 Plant protein of unknown function (DUF247) (.1) AT3G50160 115 / 2e-27 Plant protein of unknown function (DUF247) (.1) AT3G50130 115 / 4e-27 Plant protein of unknown function (DUF247) (.1) AT3G50190 112 / 2e-26 Plant protein of unknown function (DUF247) (.1) AT3G50180 110 / 1e-25 Plant protein of unknown function (DUF247) (.1) AT4G31980 103 / 4e-23 unknown protein AT5G22540 99 / 5e-22 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018320 [exp] 722 / 0 AT3G50120 210 / 2e-61 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 149 / 4e-39 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 107 / 1e-24 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10020563 [exp] 99 / 5e-23 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) Lus10035569 [exp] 101 / 8e-23 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 100 / 3e-22 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 99 / 5e-22 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 98 / 2e-21 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 90 / 5e-19 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047700 [exp] 136 / 1e-34 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 118 / 1e-28 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 115 / 2e-27 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 107 / 1e-24 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 103 / 2e-23 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 100 / 1e-22 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.010G144200 [exp] 94 / 2e-20 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 93 / 4e-20 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G017900 [exp] 90 / 4e-19 AT4G31980 274 / 4e-85 unknown protein Potri.018G029800 [exp] 86 / 6e-18 AT4G31980 317 / 1e-101 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10017132 pacid=23167435 polypeptide=Lus10017132 locus=Lus10017132.g ID=Lus10017132.BGIv1.0 annot-version=v1.0 ATGCACAGCAAAGAAGAAAACCTCCCGGAGAACCACCGCTCCTCCCGTATATTTTGCTTCTTTCGCGAGCATTTTGATTTCAAACTTCTGAAACATTTTC AAATTGTCATATTCTCTCAATCTCCCAATTCAAATATGAGCGCGGGAAGGAAGTCCCTCAGCCTTGCCCAAGCACTGCTATCTTCATCATCCACCAAAAG GATTCCATGGCGTGTTCGAACATTCTGCAGCTCCTCTGGTGGCGGCTCAGCTTCCACTGCTAATAATAACTGGAAGTCTGCCCTCCGGGAACAACTACAG AACTCAACCCCGGAACAAAGCAGCTCCGTCTCAATCTACCGAGTCCCTTTCACAATGCGTCGAGTGGAGCCCACTGCCTACGCTCCCAACCTAGTCTCTG TCGGCCCTTACCACCATGGCGATCCTCACCTTCATGAAACCGGCAACCACCTCAAGTGGAGGTTCTTCAGCCGCCTCTTCTCCTCCCCCAACTCCAGCCA CCGACCTGTAGAGCTGGACAACGTCCTGGAATCTCTGGAAACGCTGGAGGACGAGACGAGGAGATGCTACGCTGACGAAGTCAAGCTCGATGGTGGAGAG TTCGTCAGGATGATGCTACTGGACGGTTGCTTTGTCGTCGAGCTGCTTAGAGAATTGGAGAGCTATGGATTCAGGAACGGTTCTCCGTTGATTCAGAAAT GGATGCTTCCAAATCTCCGGAGAGATCTCATAATGCTGGAGAACCAGCTCCCTCTTTCCCTTCTTCAGACGCTTTTCCAATTAACAAGCGGGAACACGAC GATGAGCTCCTCCGAGGAAAAACAATCCAAAGATTCCTTCCTCAAGCTCGCGCTTCAATTCTTCAGCCCTCTTCTGCAGAGAGACTCCTCCAGGTCCGTC TCGGAAATTTGGTCCAAATTCGAGGGCAGAACCGTCAAAGAAGATCACCACTTCCTCGATTTCTTCCGCTCCAGAATCCTTCCAATAGAAGCAATGGAGG CAGAAGTAGCAATAACCTCTACCTCCCACAGTCCGGGTCAAAAACACCCATACTCGACCCGGATCCATCATCACAAGAAGAAAGTAAACAATTACCAACA ACAGGAGCCAAATATGATGCGATCAGTTAAGGAGCTGGCGAAGGCGAGGATGTTCGTAGGCAAACGGAACAACAACCGGCCGCTGGACGTCAACGGCCTG ATCAACTGTGAGGAGGACGTGGCGCTGCTGGCAAGGAAGGGGATCGTGCACCACTCGCTTGGCAGCAACCGGGAGGCTGCCGATCTGGTCAACGGTCTGA CCAATGAGGTTGTCTGCGGCGAGGATTCGTCGTCGTCGTACCTTCAGCGGGTGCTGGCGGTGGCGAATTCGTACATGTCGACTACTTACGCGGTGATGGG GGCGCCGCTGGTGGATAAGTACTTTGGGAATTGGGTGATTGCTCTCTCTTCGCTCGGGTTTGTTTTGTATGAAGCTCCGAGTTTCTTGAACCGGGTCCGG TTGTTGGCGGAGAGTATCTCCGGGGATGAAGACGATGACGACTAG
AA sequence Show only first row Show all	>Lus10017132 pacid=23167435 polypeptide=Lus10017132 locus=Lus10017132.g ID=Lus10017132.BGIv1.0 annot-version=v1.0 MHSKEENLPENHRSSRIFCFFREHFDFKLLKHFQIVIFSQSPNSNMSAGRKSLSLAQALLSSSSTKRIPWRVRTFCSSSGGGSASTANNNWKSALREQLQ NSTPEQSSSVSIYRVPFTMRRVEPTAYAPNLVSVGPYHHGDPHLHETGNHLKWRFFSRLFSSPNSSHRPVELDNVLESLETLEDETRRCYADEVKLDGGE FVRMMLLDGCFVVELLRELESYGFRNGSPLIQKWMLPNLRRDLIMLENQLPLSLLQTLFQLTSGNTTMSSSEEKQSKDSFLKLALQFFSPLLQRDSSRSV SEIWSKFEGRTVKEDHHFLDFFRSRILPIEAMEAEVAITSTSHSPGQKHPYSTRIHHHKKKVNNYQQQEPNMMRSVKELAKARMFVGKRNNNRPLDVNGL INCEEDVALLARKGIVHHSLGSNREAADLVNGLTNEVVCGEDSSSSYLQRVLAVANSYMSTTYAVMGAPLVDKYFGNWVIALSSLGFVLYEAPSFLNRVR LLAESISGDEDDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50120			Plant protein of unknown funct...		Lus10017132 [exp]	0	1
AT3G11770			Polynucleotidyl transferase, r...		Lus10036491 [exp]	25.9	0.5639
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	30.1	0.6004
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	52.1	0.5424
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	62.1	0.5305
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10043203 [exp]	113.4	0.5279
AT5G50230			Transducin/WD40 repeat-like su...		Lus10042076 [exp]	169.4	0.4892
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	181.5	0.5013
					Lus10000293 [exp]	260.7	0.4738

Compare expression of checked genes

Lus10017132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.