Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35130 766 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G18940 190 / 3e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 182 / 1e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G41720 177 / 2e-47 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62930 171 / 1e-45 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 170 / 3e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 169 / 4e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62680 168 / 4e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 169 / 6e-45 RPF2 rna processing factor 2 (.1) AT3G16010 169 / 6e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018318 [exp] 1162 / 0 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002107 [exp] 204 / 2e-56 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 201 / 6e-55 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 198 / 4e-54 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 196 / 3e-53 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 188 / 1e-50 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 185 / 1e-49 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 184 / 3e-49 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042068 [exp] 182 / 1e-48 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123600 [exp] 866 / 0 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G074700 [exp] 197 / 1e-55 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 191 / 5e-53 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 192 / 2e-52 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 186 / 4e-51 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 188 / 1e-50 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 187 / 2e-50 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G021200 [exp] 184 / 3e-50 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G297300 [exp] 186 / 5e-50 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 182 / 2e-49 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017134 pacid=23167474 polypeptide=Lus10017134 locus=Lus10017134.g ID=Lus10017134.BGIv1.0 annot-version=v1.0 ATGCTTTCTTCAATGTTATCTAATGATGTCAGTGGTCACTACTTGGTTCGAAATTTCTCAATTTTCTTTTCTACTTCTGGTTCTGTTCCTGAGAAATTGG CAAACTTTCATCATCCTTGCAGGTTGAAAGTTTTATACATCCTTCAGTACGCATTTATCATTCAACAACCAGCAGAGCGCTTCTCCTACGCCAGCAAGTT TAGATGCAAAGCCAAGAAATCTAGTACTGGTAATGGTAATGCTAGCGTGACTGTTGAGAAGAGTAGACGTGAAAGCCTTCATCTTGATAAACATGGCAAA TGGCGCAGCATCGCCCCAAGAAAGATCTCGAGGAAAAGATGTGGTTCCTTAAGGGGAAAAGGATGGAAGTATGGTTCAGGATTCGTTGATGGAATCTTTC CCGTGATAAGTCCAACTGCTCAGCAGATTCTGCAACTTGTGCAGGAGGAAGGAGTTGCAGACAACGCCATTTGGAGTGCTCTTGATAATTTGCTTCCTAC TAATGATACTTGGGATGATCTTCTTAACGTGGCTGTGCAGCTCCGTTTAAATAAACAATGGCATCCAATTGTCTTGATATGCCAATGGATGTTGTACCGG AGCCGCTTCAAGCCGGATGTTATATGCTACAACTTGCTCATAGAAGCACATGGGAACAAGTTACAGTACAAGAAAGCTGAATCCTTGTACTTCGAGCTGC TCGATGCCAGGTGCGTGCCTACGGAACACACTTACGCGCTTCTCATCAAGGCGTACTGCAATGTCTGCCTTGTCGCCAAGGCTGAAGCCATCTTTGCTGA GATGAAAAAGTATGGCCTTCCATCAAGTGCAGTTGTGTACAATGCCTACATCGACGGGCTCATGAAGGCCGGAAAATCGGAAAGAGCAGTGGAGATATAT CAGAGGATGAGAAGAGATAACTGCCAACCGTCTACTGAGACCTACACACTGATGATCAACTTGTATGGAAAGGCTAGGCGTTCATACATGGCACTAAAGC TGTTCAATGAAATGAAAAGCCAGAGGTGCAAGCCAAATATCTGCACATTCACAGCTCTCATCAACGGGTTTGCGAGGGAAGGCCAATGCGAGAAGGCAGA GGAGATATTCGAGCAGCTTCAAGCAAACGGCTTTGAGCCTGATGTCTACGCTTACAATGCTCTCATGGAGGCCTACAGCCGAGCAGGATATGCTTATGGA GCAGCTGAAGTTTTCTCCCTGATGCAGCACATGGGATGTGAACCTGATAGAGCTTCTTTCAACATCATGGTGGATGCATATGGCAGAGCTGGACTTCATC ATGAAGCACAAGCAGTATTTGAAAACATGAAGCAACTAGGAATGACACCAACAATGAAGTCCCACATGCTCCTCCTCTCCGCACACTCGAAATCCGGCAA TGTAGCCAAATGCGAGGAAATCGTGAACCAGATACACGAATCCGATATAGAACCGGACACATTCGTCCTCAACAGCATGCTGAACCTCTACGGGAAGCAA GGCCAGTTTGAGAAGATGGAACAAACTCTGGATGCAATGCAAAATGGACCATATGCAGCCGACATCAGCACATACAACATCCTGATCAACATATACGGTA GGGCCGGATTCTTCGACAGAATGGAGAGCGTGTTCGGATCGCTCCCTGGCTTGAACCTGAACCCGGATGTGGTGACTTGGACGTCAAGGCTTGGTGCTTA CTCCAGGAAGAAGCTATACGGAAAGTGCTTGGAGATATTCGAGGAAATGATTGATGCTGGATGCCACCCTGATGGTGGTACTGCTAAAGTTCTTCTTTCA GCTTGTTCTAGTGATGATCAGATTGAGCAGGTTACCACTGTCATAAGAACAATGCATAAGAGTATCTCTACTGTTCTTCCTCTCTGA
AA sequence Show only first row Show all	>Lus10017134 pacid=23167474 polypeptide=Lus10017134 locus=Lus10017134.g ID=Lus10017134.BGIv1.0 annot-version=v1.0 MLSSMLSNDVSGHYLVRNFSIFFSTSGSVPEKLANFHHPCRLKVLYILQYAFIIQQPAERFSYASKFRCKAKKSSTGNGNASVTVEKSRRESLHLDKHGK WRSIAPRKISRKRCGSLRGKGWKYGSGFVDGIFPVISPTAQQILQLVQEEGVADNAIWSALDNLLPTNDTWDDLLNVAVQLRLNKQWHPIVLICQWMLYR SRFKPDVICYNLLIEAHGNKLQYKKAESLYFELLDARCVPTEHTYALLIKAYCNVCLVAKAEAIFAEMKKYGLPSSAVVYNAYIDGLMKAGKSERAVEIY QRMRRDNCQPSTETYTLMINLYGKARRSYMALKLFNEMKSQRCKPNICTFTALINGFAREGQCEKAEEIFEQLQANGFEPDVYAYNALMEAYSRAGYAYG AAEVFSLMQHMGCEPDRASFNIMVDAYGRAGLHHEAQAVFENMKQLGMTPTMKSHMLLLSAHSKSGNVAKCEEIVNQIHESDIEPDTFVLNSMLNLYGKQ GQFEKMEQTLDAMQNGPYAADISTYNILINIYGRAGFFDRMESVFGSLPGLNLNPDVVTWTSRLGAYSRKKLYGKCLEIFEEMIDAGCHPDGGTAKVLLS ACSSDDQIEQVTTVIRTMHKSISTVLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10017134 [exp]	0	1
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	2.4	0.9434
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	3.5	0.9476
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	4.8	0.9540
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10030091 [exp]	9.3	0.9468
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	13.6	0.9459
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	13.8	0.9457
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10038581 [exp]	14.0	0.8896
AT4G21445			unknown protein		Lus10002594 [exp]	15.7	0.9386
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	18.7	0.9139
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	20.9	0.8931

Compare expression of checked genes

Lus10017134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.