Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16470 454 / 1e-164 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 451 / 2e-163 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G66140 167 / 3e-51 PAD2 proteasome alpha subunit D2 (.1) AT3G51260 161 / 4e-49 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT5G35590 151 / 2e-45 PAA1 proteasome alpha subunit A1 (.1) AT1G53850 150 / 5e-45 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT2G05840 149 / 3e-44 PAA2 20S proteasome subunit PAA2 (.1.2) AT3G14290 149 / 3e-44 PAE2 20S proteasome alpha subunit E2 (.1) AT3G22110 145 / 5e-43 PAC1 20S proteasome alpha subunit C1 (.1) AT5G42790 138 / 7e-40 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036210 [exp] 471 / 3e-171 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10018318 [exp] 451 / 2e-155 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041890 [exp] 166 / 4e-51 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10028437 [exp] 161 / 4e-49 AT5G66140 417 / 8e-150 proteasome alpha subunit D2 (.1) Lus10027669 [exp] 157 / 3e-47 AT2G05840 473 / 1e-171 20S proteasome subunit PAA2 (.1.2) Lus10042145 [exp] 148 / 9e-44 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10037454 [exp] 151 / 3e-42 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10004235 [exp] 142 / 3e-42 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10003936 [exp] 151 / 4e-42 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123550 [exp] 466 / 1e-169 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 466 / 1e-169 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.004G174200 [exp] 172 / 3e-53 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.009G133800 [exp] 171 / 5e-53 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.006G110800 [exp] 158 / 5e-48 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2) Potri.006G140400 [exp] 155 / 7e-47 AT2G05840 463 / 7e-168 20S proteasome subunit PAA2 (.1.2) Potri.001G162900 [exp] 154 / 2e-46 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.003G072500 [exp] 154 / 2e-46 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.016G139600 [exp] 151 / 4e-45 AT2G05840 459 / 2e-166 20S proteasome subunit PAA2 (.1.2) Potri.016G015400 [exp] 146 / 3e-43 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10017135 pacid=23167428 polypeptide=Lus10017135 locus=Lus10017135.g ID=Lus10017135.BGIv1.0 annot-version=v1.0 ATGGGCGACTCTCAGTACTCGTTTTCGCTCACCACCTTCAGTCCTTCAGGGAAGCTAGTTCAGATCGAGCACGCCTTAACGGCTGTGGGTTCCGGCCAAA CTTCTCTGGGAATCAAAGCTGCCAATGGTGTTGTTATTGCGACTGAGAAAAAGCTACCTTCCATTCTAGTCGATGAAGGATCTGTTCAGAAAATACAATG TCTAACTCCAAATATTGGAGTTGTATACAGTGGCATGGGACCTGATTTTCGAGTTTTGGTCCGGAAAAGCAGGAAGCAGGCTGAACAGTATCACAAACTA TATAAGGAAGCAATACCGGTTACACAGCTTGTGAGGGAAACTGCAGCTGTCATGCAGGAGTTCACTCAGTCGGGAGGCGTGAGACCTTTTGGTGTATCTC TCCTCGTTGCTGGTTTCGATGACAAAGGTCCACAACTGTATCAGGTGGATCCTTCTGGTTCATATTTCTCATGGAAGGCCTCTGCAATGGGGAAGAATGT CTCAAATGCTAAAACATTTCTTGAAAAGAGGTATACGGAGGATATGGAACTTGATGATGCGGTGCACACTGCTATTCTAACATTGAAGGAAGGTTTTGAG GGACAGATCTCAGGAAAGAACATTGAGATTGGCATAATTGGCGCAGACAAGACATTCCGGGTTCTAACTCCAGCCGAAATCGATGATTATCTAGCCGAAG TCGAATAA
AA sequence Show only first row Show all	>Lus10017135 pacid=23167428 polypeptide=Lus10017135 locus=Lus10017135.g ID=Lus10017135.BGIv1.0 annot-version=v1.0 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDEGSVQKIQCLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHKL YKEAIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGFDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAVHTAILTLKEGFE GQISGKNIEIGIIGADKTFRVLTPAEIDDYLAEVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	0	1
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	1.0	0.9274
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	2.0	0.9060
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	2.4	0.9047
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	2.6	0.8843
AT4G31310			AIG2-like (avirulence induced ...		Lus10020179 [exp]	4.5	0.8687
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	6.3	0.8902
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	8.7	0.8943
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	13.0	0.8669
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	15.0	0.8021
AT4G08240			unknown protein		Lus10009881 [exp]	15.5	0.8859

Compare expression of checked genes

Lus10017135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.