Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34320 553 / 0 Protein of unknown function (DUF668) (.1) AT5G08660 523 / 2e-179 Protein of unknown function (DUF668) (.1) AT1G30755 408 / 4e-135 Protein of unknown function (DUF668) (.1) AT5G51670 97 / 4e-21 Protein of unknown function (DUF668) (.1) AT3G23160 86 / 3e-17 Protein of unknown function (DUF668) (.1) AT5G04550 82 / 3e-16 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018317 [exp] 1115 / 0 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 547 / 0 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 469 / 9e-159 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 454 / 2e-152 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 394 / 7e-131 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 329 / 3e-106 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 87 / 1e-17 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 87 / 1e-17 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 86 / 3e-17 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001500 [exp] 627 / 0 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 586 / 0 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 580 / 0 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 579 / 0 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 471 / 1e-159 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 459 / 9e-155 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 130 / 4e-32 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 97 / 5e-21 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 86 / 4e-17 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 84 / 1e-16 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10017136 pacid=23167387 polypeptide=Lus10017136 locus=Lus10017136.g ID=Lus10017136.BGIv1.0 annot-version=v1.0 ATGGGAGGTCGTAGTTCGAAGAACGGGAAAGCGCCTTCTTCGGTTCTCAATTCAAAGCAGAATGGCCATAATCGCTACTATAACAACAAGCAGTCTACTA GCGAAAGTGGCGGCGTATCAATTCACAATCTAAATGGTTCGAGTACCACGAAGCAGCTGGAGCTGCAACAGGGAATGGATCATCTCCAGAATGAGTCATT TCCACATTCTAGCTCTGTGGCTAATGGTAATAAGTCAGGCGCTGATATTTACGACGGGATTCCGCTTTATTCTTCTTCGGAATCGAAATCTGCTCGTTCT AGGCAGAGGGCTGTTTCCAAGGTTTCAGGGGTCAGTTCACGTTTGGGTAGAGCTGGTTCAGTCGGGCTGGGAAAAGCAGTGGAAGTATTGGACACTCTTG GGAGTAGCATGGCGAATTTGAACCCTAACGGTGGATTCGCCTCTTCTGTCACGACCAAAGGCAATGAGCTTGGAATCTTAGCTTTGGAGGTGGCTAACAC TATTGTGAAAGGCTACAACCTTATGCAATCCCTTTCCAAAAGAAATATTAAACGCCTAAAAGAAGGGGTGCTCCCGTCAGAAGGCATCCAAAACTTAGTT TCAAACGACATGGATGAACTCTTGAGGATTGTTGCAGCTGACAAAAGGAATGAGTTCAAGATTTTCTCAAGTGAAGTATTCCGTTTTGGGAACCGATGTA AAGATCCTCAGTGGCACAACTTGGATCGTTATTTTGAGAAGATTAGCAAAGAGTTCGCTCCTCAAAGGCAGTCGAAAGAAGAGGCAGAATCAGTGATGGA GGTTTTGATGATTTTGGTTCAGAATACAGCAGAATTATACCAAGAGTTGCAAGTGCTCGACAAAATTGACCTAGAGTATCACCATAAACATAGTGAGGAT GATAATTCAGGCACAGGTCGGAAAGGCAAAGGCTTAGCGATCTTAAAGGCAGAATTGAAAGGCCAGAAGAAGGAAGTACGAAACCTGAAGAAAAAATCAC TTTGGTCCAGAAGTGTAGAAGAGGTGATGGGGAAACTTGTAGATATTGTCCGTTTTTTGCTCTTGGAGATCAATGAAACCTTTGGCAGTGAAGATAACGG CAAATACGTGAATGCATCTTTGAGACTGGGACCTGTTGGGCTGTCTTTGCATTATGCAAACATGATTTTACAAATTGATGATATAGTGGCACAATCAAGT AACTTGCCTGCAAACGCGAGAAATGGATTGTACCAGAGTCTGCCACCAAATATAGAGTTGGCATTGCGTTCTAGATTACCGTCGTTTGAAGTCAAAGAAG AGCTTAGCGTCACGGAGATGAAAGATGAGATGGAAAAGACTCTAGCGTGGCTTGTTCCCATGTCGACTAACACAGCCAAAGATCACCATGGGTTTGGTTG GGTTGGAGAATGGGCAAATACAGGGCCGGACGGAAGCCGCAGGAGCGTAGCGGGGAATGTGGATTTCATAAGGATGGAGTCTCTGCATCACGCGGACAAG GAGAAAACAGAAGCCTACATTCTTGAACTGCTATTGTGGTTACATCAACTAGTCAGAAAATCAAAGACCCGTAACGATTTAAAAACCAAATCAGCGCTGA TGTCTTCTACGACGCCACCACCTGATGTCCAGAAGCTGTCGGATACAGAGTCTGTTATCACCGTTGAAGAGCAGGATACGGTGGAAGATGCGAGTAAGAA CGATGATGGTGGGAGTTTGGAAATAAAGGAAGAGGAGGACATAGTTGCACATGAATCTGTGAGAGGAAAGCGGGACGAGAAAGTGAGCGAGTTCTCCAAG CTGTCCGATCCGGACATCACGATTACAAATTTGACCAAGACAAAGCTAGAGAACCTTTGA
AA sequence Show only first row Show all	>Lus10017136 pacid=23167387 polypeptide=Lus10017136 locus=Lus10017136.g ID=Lus10017136.BGIv1.0 annot-version=v1.0 MGGRSSKNGKAPSSVLNSKQNGHNRYYNNKQSTSESGGVSIHNLNGSSTTKQLELQQGMDHLQNESFPHSSSVANGNKSGADIYDGIPLYSSSESKSARS RQRAVSKVSGVSSRLGRAGSVGLGKAVEVLDTLGSSMANLNPNGGFASSVTTKGNELGILALEVANTIVKGYNLMQSLSKRNIKRLKEGVLPSEGIQNLV SNDMDELLRIVAADKRNEFKIFSSEVFRFGNRCKDPQWHNLDRYFEKISKEFAPQRQSKEEAESVMEVLMILVQNTAELYQELQVLDKIDLEYHHKHSED DNSGTGRKGKGLAILKAELKGQKKEVRNLKKKSLWSRSVEEVMGKLVDIVRFLLLEINETFGSEDNGKYVNASLRLGPVGLSLHYANMILQIDDIVAQSS NLPANARNGLYQSLPPNIELALRSRLPSFEVKEELSVTEMKDEMEKTLAWLVPMSTNTAKDHHGFGWVGEWANTGPDGSRRSVAGNVDFIRMESLHHADK EKTEAYILELLLWLHQLVRKSKTRNDLKTKSALMSSTTPPPDVQKLSDTESVITVEEQDTVEDASKNDDGGSLEIKEEEDIVAHESVRGKRDEKVSEFSK LSDPDITITNLTKTKLENL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	0	1
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	4.2	0.9051
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	9.2	0.9223
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	9.9	0.8946
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10024192 [exp]	10.2	0.8970
AT1G67000			Protein kinase superfamily pro...		Lus10014923 [exp]	10.6	0.9039
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10005418 [exp]	11.5	0.8757
AT2G40095			Alpha/beta hydrolase related p...		Lus10040195 [exp]	15.5	0.8866
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	15.7	0.8894
					Lus10033269 [exp]	15.7	0.9161
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	16.0	0.9114

Compare expression of checked genes

Lus10017136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.