Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19900 665 / 0 alpha 1,4-glycosyltransferase family protein (.1) AT2G35140 179 / 1e-45 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT3G09020 145 / 5e-37 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 139 / 3e-35 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 126 / 2e-30 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 125 / 3e-30 alpha 1,4-glycosyltransferase family protein (.1) AT2G38150 120 / 9e-29 alpha 1,4-glycosyltransferase family protein (.1) AT5G61910 109 / 5e-24 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT3G11000 102 / 3e-22 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT5G01660 102 / 8e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018316 [exp] 1265 / 0 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10018315 [exp] 1030 / 0 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 135 / 1e-33 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 133 / 6e-33 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 133 / 1e-32 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 130 / 5e-32 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 127 / 5e-31 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10012220 [exp] 119 / 4e-28 AT5G01660 224 / 1e-66 unknown protein Lus10011206 [exp] 110 / 1e-24 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122200 [exp] 617 / 0 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122300 [exp] 218 / 2e-57 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.016G114200 [exp] 140 / 4e-35 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 134 / 5e-33 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 134 / 6e-33 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.001G136300 [exp] 103 / 2e-23 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.016G127600 [exp] 99 / 1e-20 AT5G01660 628 / 0.0 unknown protein Potri.008G074200 [exp] 98 / 3e-20 AT5G01660 488 / 2e-164 unknown protein Potri.013G029200 [exp] 93 / 5e-19 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1) Potri.006G098900 [exp] 87 / 7e-19 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region CL0110 [flax] [poplar] PF10539 [flax] [poplar] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Lus10017137 pacid=23167477 polypeptide=Lus10017137 locus=Lus10017137.g ID=Lus10017137.BGIv1.0 annot-version=v1.0 ATGACACGCAATAGAGATCCTTCAGGAAGATATCCAGGATATGGTGCTATCTTTATGTCGAACAGAGACACGAAGGAAGAATGTCTTCGGTTGAAACTAT TTGGCCTTCCACCGGCGCAAGCAGAGTTTGTAAGACATGTTAAATATGGCATGTTCTTGTTTCTTTTTGAATATCAGAGTAGAGAACTACATGGGGTATT TCAGGCTACCTCTGATGGTGAAATGGATATTATGCCACATGCATACAGTAATTCAGGGATGAAGTTCCCTGCACAGGTAAAGTTCAAAACTATCTGGAAG TGCACTCCCCTACCAGAAACTTTGTTTACTGGAGCAATCAGTGATAATTACTTTGCTCCATACAAGTTCAATTTTGGGTTGAGTAAAAGGCAGGTCCAAA ATCTTTTAGATCTCTTTCATCGAAGGAGACTAGTGCCGCAGCCCCGTATTGGGCAGGTTCCAGAAGGTAACATCACAAGATCAGTCCCTAATCTGGATGA ACCTGAAGGAGCAATTGATGGAGGCAACATCAACCTCAGTATGGAAAGATATGGTCGAAATGTTGTTCCTGGTTCTGGATCAGTTCCATCATTTGAGCAT TCTCAAAACCCTATCAGTTACAACAGAAGAGCAACAGGTGTGTATGGAAGCCCTTCTATCAGAAATGATTACGGATTTAATGATGATTATTCTGTGCGAT TTAACCCTAATGAATACGAAAGGGACTTTGCTAGCAATGTAAGAGTGCCAGTTTCTGATGATTGGCATTTAGCTAGAGGGGATTTGGGGAATGGAACAGA TGCAGATAATAGGCCAGGTGATAGAAGTTGGAATTGTGAGCCTAATGTACCTACCGCCATGAAAGCTTCTAGTACTGGTTCTGATCTACCTATCTTGAAC GAGAAGAACGAGAAACCTGGTGCATCTCTTTCAAATCCTCCACTGTACGGAAGCATGCTAAATCATGCTACAAATCCTTTGGGCGATGACTCAACCTTAC CCTGCTCAGTCTCAAATGTGGAGACACTGCCGAGGTCAATCTCTCATGGTTCTTATTTGGCATCCTATAGTGAAACTGTTGGTACTAACACACATCCTTA CAATCCCAACGCTCCTAGCCTTGATATTAGCCCCTCATATGTATCGAGGGACACGAGGTCTTTACTACAGTCCAGTCCTAGACCCAGCAGTGCCTATCCA TCTCATCAAAATCAGTTGCTTCCACCAAATAGGGAAGTTGGACAAGACAATAGTTGGCGAAATGCTCATTCTAGTTTCCTCTTTGATGTACCTACTGACA ATAATGAGGACTGCAACAGGTTCAGCATACTTTACAGACTGAATGCGCACACTGAGGATGATGTTTTGGGGGACATCAACTTTCCGAGGCCAGCCCTTTC TCCTCCACTGCGGTATGGAAATCAACATATTCATATAGCTAAGAACCTTTCCATGCTTCCTGTGAATACTCCTTCAGTTTCAAGTCAATATGGAACTTAT GAAGTTTCTAGAAACGACATTCGTAATTTGGAGGGGACTGGTACTGGGACTCGAACCGCAAATTATGTTTCCAATTCTCTAGTAGATCTGTATGGCGGTC AAGGTTCTGAAAGGCCAGCTCGTTCTCCTCCACAGTATGGGAATCAAGGTATTCATATAGCTGATCAGAACCGTTTCATGCCTCCTGTGGATACTCCTCC ATTTTCAAGTCATGGGCAGTCGAGGACTTCGCTAGAAGGGATTCCACAATATGGAACCTATGAAGTTTCCAGAAACGTCATTCATAATTCGGAGGAGACT GGTACTGGGACTCGAACAGCAAAATATGTTTCCAATTCTGAATTAGATTTGTTTGGTCGTCAAGGTTCTGAAAGGATGTACTCAAATCAAGTAAACCCCA GGGGTTCTGTGTTCGAGCGCTTAGCTAAGCCTATTGAAGTAAGTGAAGATAGCAGTACTGACTCCGAGGGAGATGATGGGTATGCATTTTCATCGGTGGC TGAAATCATGGCGTCAGTGGGACAATTGGGGTATCCATGGGTTAATGATGAACCGGTTGAGTTTCAGGCCCCGAAGCACAAGTGTGTCAAAACTTCAGCA TGGGTTAATGATGAACCGGTTGAGTTTCAGGCCCCGAAGCACAAGTGTGTCAAAACTTCAGGGAACAAACGACAAGTTCCTTTGGTATACAAGCGGGCAG AAGTGGTAAGTACTGAGATGGATACAAATAATGCCATAATAAGAGAAGAAAGTGATGCTCTCTTGAAGAAGAAAGCTCCTTTTTATGATTTCAAGCGTCG CAGTAGTAAGCTTGCCGAGGCTCGGGTTGAGGCTAACTCTGGCAACGGCCAGAGCGCGAGTGCTGAAACTGATAGCCCAACGATGGATTTGCAGCATAAG AAGAGGAAGTTAATTCGGCCAAAATTTGACGACGAACATGGCACTGATATTGCCATGCAGTCGCAGCCCCGGATCAAGCCCGCGCTATCCTCCTCGGGGT ATTACGTCGACCACGTCAGCGGATCCATCCGGCGCGCACTCCACCGACGCTCGATCGACGATTGGGACGCCGACTACAATTCTTTCACAGTCGCCGTGGA GGATGAGAGCAAGGCGGCGATCGGGAGCGACGATGTACCGATCGACGAGGAGGTGAGGAGGAAAGTGACTGAGGTTCAGGGGATTGAGGACGCGCTGCTG TTAAAGATTGGGAAGAGAGTTTCGCCTTTGAGGGAAGGCTGGGGGGATTGGTTTGAGAAGAAGGGCGATTTCTTGAGGAGGGATAGGATGTTCAAATCAA ATTTGGAGGTCTTGAATCCTGTGAACAATCCTCTTTTGCAGGATCCAGATGGAGTTGGAATCACTGGATTGACAAGAGGTGATAAGGCATTGCTGAAGCT TCTGTTGAGTGAGTACAAACGTTCTCCATTCCTTGTGAAGAAGCCTTTGAGTGTTTCTGAAGCAACTCCAGATGGAAAATTGGAGAATAAGAATGGTTTC AAGCTACCTGAAAGAAGAGCTCTCCATGACAATGGCAATGACGAATCGAATGGGAAAATCATTCTCAACGGTATCACTGAAGGTAGTAATGTGATTAACA AGAACGTATCATTCTCTGTGGAAAGTAGTAATGCAGTTCACAATAATTCTACTAACGTAAGCAAAATACAAGACATGTCCGTTGTAGATGATAAAGGTGA GAGTGAGGTAGCTGAAGATTTAGGTGGTGTTTATGCAGACGGGAAGAGATGGGGTTATTACCCTGGTTTACATCCTCACTTGTCCTTTTCGGAGTTTGTG GATTCATTTTTCAGAAACAGCAAGTGTGAGATGAGAGTGTTCATGGTATGGAACTCACCACCATGGATGTACAGTATTAGACACCAGAGGGGGCTGGAAA GTCTTCTGTCTCACCATAAGGATGCTTGTATTTTGGTGTTATCTGAGACAATTGATCTGGACTTCTTCAAGAATAGCTTCGTGAGAGACGGATACAAGAT TGCTGTTGCTATGCCAAATCTTGACGAATTGCTGAAAGACACACCAACCAGTGTATTTGCTTCGGTTTGGCATGAATGGAGGAAGACAAAGTTCTATCCT ACACATTACAGTGAGCTTCTGAGACTTGCAGCTCTGTATAGATATGGAGGCGTTTATCTTGACTCTGACATTGTTGTTGTGAATCCCTTGTATTCGCTTA ACAATACCATCGGCATGGAAGATGAACGCACCGGTAGTTCTCTGAATGGGGCTGTGATGTCATTCAGACAGAAAAGTCCATTCATGCTAGAGTGCTTAAA CGAATTCTACATGACATATGAGGATACCAAATTGAGATGGAATGGAGCTGAACTTTTGACTCGAGTCTGGAACAACAATCTGAAACATGATTCATCAATT AAGCAACAGGAGCTGAATGTGCAGCCCTCTTACGTGTTCTTTCCAATCAATTCCCAGGATATTACCAGCTATTTCACAACACCTACAACCGAGAACGATG GAGCTCAGCAAGACGCCCTCTTCACAAGGATCACCAAACAATCATTGACATTCCATTTCTGGAACAGCTTGACATCTACTCTCATCCCCGAACCGGGAAG CCTCGCAGCTCGCCTCATCAACCATTCCTGCATCCGCTGCTCAGATGTGTTGTGA
AA sequence Show only first row Show all	>Lus10017137 pacid=23167477 polypeptide=Lus10017137 locus=Lus10017137.g ID=Lus10017137.BGIv1.0 annot-version=v1.0 MTRNRDPSGRYPGYGAIFMSNRDTKEECLRLKLFGLPPAQAEFVRHVKYGMFLFLFEYQSRELHGVFQATSDGEMDIMPHAYSNSGMKFPAQVKFKTIWK CTPLPETLFTGAISDNYFAPYKFNFGLSKRQVQNLLDLFHRRRLVPQPRIGQVPEGNITRSVPNLDEPEGAIDGGNINLSMERYGRNVVPGSGSVPSFEH SQNPISYNRRATGVYGSPSIRNDYGFNDDYSVRFNPNEYERDFASNVRVPVSDDWHLARGDLGNGTDADNRPGDRSWNCEPNVPTAMKASSTGSDLPILN EKNEKPGASLSNPPLYGSMLNHATNPLGDDSTLPCSVSNVETLPRSISHGSYLASYSETVGTNTHPYNPNAPSLDISPSYVSRDTRSLLQSSPRPSSAYP SHQNQLLPPNREVGQDNSWRNAHSSFLFDVPTDNNEDCNRFSILYRLNAHTEDDVLGDINFPRPALSPPLRYGNQHIHIAKNLSMLPVNTPSVSSQYGTY EVSRNDIRNLEGTGTGTRTANYVSNSLVDLYGGQGSERPARSPPQYGNQGIHIADQNRFMPPVDTPPFSSHGQSRTSLEGIPQYGTYEVSRNVIHNSEET GTGTRTAKYVSNSELDLFGRQGSERMYSNQVNPRGSVFERLAKPIEVSEDSSTDSEGDDGYAFSSVAEIMASVGQLGYPWVNDEPVEFQAPKHKCVKTSA WVNDEPVEFQAPKHKCVKTSGNKRQVPLVYKRAEVVSTEMDTNNAIIREESDALLKKKAPFYDFKRRSSKLAEARVEANSGNGQSASAETDSPTMDLQHK KRKLIRPKFDDEHGTDIAMQSQPRIKPALSSSGYYVDHVSGSIRRALHRRSIDDWDADYNSFTVAVEDESKAAIGSDDVPIDEEVRRKVTEVQGIEDALL LKIGKRVSPLREGWGDWFEKKGDFLRRDRMFKSNLEVLNPVNNPLLQDPDGVGITGLTRGDKALLKLLLSEYKRSPFLVKKPLSVSEATPDGKLENKNGF KLPERRALHDNGNDESNGKIILNGITEGSNVINKNVSFSVESSNAVHNNSTNVSKIQDMSVVDDKGESEVAEDLGGVYADGKRWGYYPGLHPHLSFSEFV DSFFRNSKCEMRVFMVWNSPPWMYSIRHQRGLESLLSHHKDACILVLSETIDLDFFKNSFVRDGYKIAVAMPNLDELLKDTPTSVFASVWHEWRKTKFYP THYSELLRLAALYRYGGVYLDSDIVVVNPLYSLNNTIGMEDERTGSSLNGAVMSFRQKSPFMLECLNEFYMTYEDTKLRWNGAELLTRVWNNNLKHDSSI KQQELNVQPSYVFFPINSQDITSYFTTPTTENDGAQQDALFTRITKQSLTFHFWNSLTSTLIPEPGSLAARLINHSCIRCSDVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	0	1
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	1.7	0.7544
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Lus10007444 [exp]	1.7	0.7729
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	4.5	0.7074
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	10.2	0.6974
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	13.6	0.7707
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	14.9	0.6776
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	19.5	0.6670
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	26.8	0.6834
AT4G00440			Protein of unknown function (D...		Lus10014776 [exp]	27.3	0.7278
AT3G02420			unknown protein		Lus10003064 [exp]	30.3	0.6877

Compare expression of checked genes

Lus10017137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.