Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35150 240 / 1e-79 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT2G17230 239 / 7e-79 EXL5 EXORDIUM like 5 (.1) AT5G51550 218 / 7e-71 EXL3 EXORDIUM like 3 (.1) AT5G64260 110 / 2e-29 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT4G08950 97 / 2e-24 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT1G35140 93 / 1e-22 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT5G09440 89 / 3e-21 EXL4 EXORDIUM like 4 (.1) AT3G02970 46 / 6e-06 EXL6 EXORDIUM like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018314 [exp] 358 / 1e-125 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10026548 [exp] 230 / 3e-75 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1) Lus10013834 [exp] 230 / 3e-75 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10031130 [exp] 210 / 1e-67 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10031709 [exp] 190 / 6e-61 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10021370 [exp] 107 / 8e-28 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017050 [exp] 105 / 4e-27 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 95 / 2e-23 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10013789 [exp] 62 / 3e-11 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122100 [exp] 287 / 5e-98 AT2G35150 377 / 3e-131 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Potri.009G167800 [exp] 238 / 1e-78 AT2G17230 499 / 1e-178 EXORDIUM like 5 (.1) Potri.004G206600 [exp] 234 / 1e-76 AT2G17230 481 / 4e-171 EXORDIUM like 5 (.1) Potri.015G129700 [exp] 221 / 9e-72 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.012G128100 [exp] 217 / 3e-70 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.005G163000 [exp] 106 / 1e-27 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.005G163500 [exp] 101 / 7e-26 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163300 [exp] 101 / 8e-26 AT4G08950 436 / 8e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163600 [exp] 101 / 8e-26 AT4G08950 438 / 1e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163700 [exp] 101 / 1e-25 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [flax] [poplar] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Lus10017138 pacid=23167401 polypeptide=Lus10017138 locus=Lus10017138.g ID=Lus10017138.BGIv1.0 annot-version=v1.0 ATGCAGTCCATCATCAACCCCGCCGTCTCCGGCGGCGGAATGCCTCTCAACACCAGAGACGGAATCTATCTTGTTTTGACTTCACACGACGTTGTCGTTC AGGACTTTTGTCGAGCAGTTTGCGGGTTCCACTACTTTACTTTCCCCTACCTCGTCGGAGCCGCCGTGCCGTACGCCTGGGTCGGGTACAGTGGCACGCA GTGCCCCGGGATGTGCGCCTACCCGTTCGCCTGGCCGACTTACTCCGGCGGGAAGCGGCCGCCGAACAACAACATTATGAAGTCCCCCAACGGAGACGCT GGAATTGACGGGATGATCAGCGTCATCGCTCACGAGCTAGCGGAGGTGTCGAGCAACCCCCTGGTCAACTCTTGGTACGCTGGTGATGATCCGATAAATC CGACGGAGATCGCGGACTTGTGCTTGGGAGTCTACGGCACTGGCGCCGGCGGCGGGTACGTCGGCCAGGTGATGAAGGACGCCTGGGGAGACGTGTACAA CGTTAATGGAGTTAAGGGGAGGAAGTTTCTGTTGCAGTGGGTTTGGAATCCGGCTAGGAGAAGATGCTTTGGTCCAAATGCTAGGGATTGA
AA sequence Show only first row Show all	>Lus10017138 pacid=23167401 polypeptide=Lus10017138 locus=Lus10017138.g ID=Lus10017138.BGIv1.0 annot-version=v1.0 MQSIINPAVSGGGMPLNTRDGIYLVLTSHDVVVQDFCRAVCGFHYFTFPYLVGAAVPYAWVGYSGTQCPGMCAYPFAWPTYSGGKRPPNNNIMKSPNGDA GIDGMISVIAHELAEVSSNPLVNSWYAGDDPINPTEIADLCLGVYGTGAGGGYVGQVMKDAWGDVYNVNGVKGRKFLLQWVWNPARRRCFGPNARD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017138 [exp]	0	1
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	1.0	0.9291
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	2.4	0.8983
AT3G26935			DHHC-type zinc finger family p...		Lus10032009 [exp]	7.3	0.8111
AT1G11915			unknown protein		Lus10023362 [exp]	7.9	0.8508
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10017535 [exp]	9.8	0.8128
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	12.2	0.8198
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	13.2	0.8428
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	13.4	0.8206
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10017336 [exp]	13.9	0.8011
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	14.6	0.8430

Compare expression of checked genes

Lus10017138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.