Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35150 125 / 1e-35 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT2G17230 113 / 1e-30 EXL5 EXORDIUM like 5 (.1) AT5G51550 94 / 2e-23 EXL3 EXORDIUM like 3 (.1) AT1G35140 40 / 0.0004 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018314 [exp] 189 / 3e-60 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10026548 [exp] 100 / 8e-26 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1) Lus10013834 [exp] 97 / 1e-24 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10031130 [exp] 94 / 3e-23 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10013789 [exp] 50 / 7e-08 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1) Lus10036484 [exp] 39 / 0.0008 AT5G64260 301 / 2e-102 EXORDIUM like 2 (.1) Lus10031709 [exp] 39 / 0.0008 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122100 [exp] 130 / 1e-37 AT2G35150 377 / 3e-131 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Potri.004G206600 [exp] 105 / 6e-28 AT2G17230 481 / 4e-171 EXORDIUM like 5 (.1) Potri.009G167800 [exp] 102 / 1e-26 AT2G17230 499 / 1e-178 EXORDIUM like 5 (.1) Potri.012G128100 [exp] 89 / 1e-21 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.015G129700 [exp] 87 / 6e-21 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.014G126000 [exp] 52 / 2e-08 AT5G64260 240 / 9e-78 EXORDIUM like 2 (.1) Potri.013G080100 [exp] 45 / 3e-06 AT3G02970 213 / 7e-67 EXORDIUM like 6 (.1) Potri.002G098600 [exp] 42 / 5e-05 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163700 [exp] 41 / 0.0001 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163500 [exp] 40 / 0.0002 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [flax] [poplar] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Lus10017139 pacid=23167480 polypeptide=Lus10017139 locus=Lus10017139.g ID=Lus10017139.BGIv1.0 annot-version=v1.0 ATGCAGAACCAGAAGAAACTCCTCCATTGCTTCCTCTCAATCTCCTTCTCCTTCTTCTTCCTCGTGTCTTCTCCAGCACGGAGCAGCAGCCAAGAACAAG ACAAAGGATTCATATTCAGGCAATCCAAGAACTACGAAGGATCCTCTGACCTGATCGATGTAAACTACCACATGGGTCCTGTTCTAGCCTCCCCCGTCAG TCTCTACATCATCTGGTACGGCCAATGGAGTTCACCCCATCAATCCACCATCAGAGATTTCATCTCCTCTATTTCCGCACCATCTTCTTCTTCTTCTTCT TCTTCTACCATTCGCCACCCTTCTGTTTCAGACTGGTGGCAGACGGTTCGCCTCTACACAGACCAAACAGGATCCAACATCACCGACAAAATCACCCTCG TCGGCGAGCTCGCCGACTCAGACTACTCCCACGGCCGTGACTTGAACCGGGGGGCGTGGTAG
AA sequence Show only first row Show all	>Lus10017139 pacid=23167480 polypeptide=Lus10017139 locus=Lus10017139.g ID=Lus10017139.BGIv1.0 annot-version=v1.0 MQNQKKLLHCFLSISFSFFFLVSSPARSSSQEQDKGFIFRQSKNYEGSSDLIDVNYHMGPVLASPVSLYIIWYGQWSSPHQSTIRDFISSISAPSSSSSS SSTIRHPSVSDWWQTVRLYTDQTGSNITDKITLVGELADSDYSHGRDLNRGAW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	0	1
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017138 [exp]	1.0	0.9291
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	4.5	0.8948
					Lus10002061 [exp]	5.7	0.8507
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	5.9	0.8798
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	6.9	0.8764
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	7.2	0.8864
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	7.7	0.8939
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10035600 [exp]	10.4	0.8255
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	11.5	0.8715
AT1G11915			unknown protein		Lus10023362 [exp]	16.7	0.8351

Compare expression of checked genes

Lus10017139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.