Plant FIBer expression Database

Lus10017140 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45030 749 / 0 Trypsin family protein (.1.2)
AT2G35155 726 / 0 Trypsin family protein (.1)
AT3G12950 629 / 0 Trypsin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018312
[exp]
1129 / 0 AT5G45030 791 / 0.0 Trypsin family protein (.1.2)
Lus10036208
[exp]
916 / 0 AT5G45030 830 / 0.0 Trypsin family protein (.1.2)
Lus10038347
[exp]
912 / 0 AT5G45030 834 / 0.0 Trypsin family protein (.1.2)
Lus10031205
[exp]
694 / 0 AT5G45030 734 / 0.0 Trypsin family protein (.1.2)
Lus10031785
[exp]
686 / 0 AT5G45030 738 / 0.0 Trypsin family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G121700
[exp]
875 / 0 AT5G45030 804 / 0.0 Trypsin family protein (.1.2)
Potri.015G121400
[exp]
860 / 0 AT5G45030 821 / 0.0 Trypsin family protein (.1.2)
Potri.011G143200
[exp]
741 / 0 AT5G45030 752 / 0.0 Trypsin family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10017140 pacid=23167415 polypeptide=Lus10017140 locus=Lus10017140.g ID=Lus10017140.BGIv1.0 annot-version=v1.0
ATGAACAGGAACAGGTTGGATTTAAGGACGCATCACTCCAGATCAACAACGCAGTCGGAAGAATCTGCATTGGATATGGAAAGAAACTGCTGCAACCATT
CTAATCTCCCTTGGTCAAGTCCGGCCTCATTGCAGCCCGGTGGTCAGCAGCACTCTGAGAGTATTGCTGCTTATTTTTCGTGGCCTACTGTGAATAGATT
GAATGACTCAGCCGAAGATAGAGCCAACTATTTTGGTAACCTACAGAAAGGGCTGTTGCCAGAAATTCTTGGCAGGCTGCCATCAGGGCAGCAATCTACT
ACTTTGCTTGAACTGATGGCCATCAGGGCTTTCCATAGCAAAATCTTGCGCAGGGTAAGCCTAGGAACGGCGATTGGATTTAGGATCCGGCGGGGTGTTT
TAACTGACATTCCTGCTATTCTTGTCTTTGTCGCCCGGAAAGTGCACCGGCAGTGGCTCAATCATGTCCAGTGCCTACCTTCTGCCCTTGAGAGACCAGG
AGGTGTTTGGTGTGATGTGGATGTTGTCGAATTCTCGTATTTTGGTGCTCCTGCTCCTACGCCGACGGAACAACTATACACTGAACTTGTTGATGGGCTA
AGGGGAGGTGATCCATCAGTTGGTTCTGGTTCCCAGGTGGCTAATCAAGAAACCTATGGAACCCTGGGCGCTATAGTGAAAAGCCGGGCAGAAAACAGAC
AGGTCGGTTTCCTCACAGATCGTCACGTTGCAGTCGATTTAGAACAACCAAACCAGAAGATGTTTCATCCTTTACCTCCCAGCCGTGGACCTGGAGTTTA
TTTGGGTGCGGTAGAGAGAGCAACCTCTTTCATCTCAGACGAGCTTTGGTATGGAACTTTTGCTGGAATGAACCCAGAAACATTTGTTCGGGCAGACGGA
GCCTTCATTCCATTTGCAGAAGATTTCAACATGAACAACGTCACGACATTGGTTAGAGGTGTGGGGGAGATTGGTGACGTCCATGCTATAGACATGCAGT
CTCCAATCAACGGACTTATCATTAGGCAAGTAGTGAAAGTTGGAAGAAGCTCTGGATTAACGACCGGTACAATAATGGCGCATGCTCTGGAGTATAACGA
CGACAAAGGGATCTGTTTCTTTACGGATTTTCTTGTCGTTGGAGAGAACCATCAGCCGTTTGATCTTGAAGGGGATAGCGGTAGCCTTATTCTCTTGACT
GGTAGTGGGTGTGATAAGAAGTTGCAACCGGTTGGAATCATTTGGGGAGGGACTGCAAATAGAGGCAGGCTGAAGCTGAAAGTTGGCCAGCCACCAGAGA
ATTGGACCAGTGGGGTTGATCTTGGGCGCCTTCTTGACCTCCTTGAACTCGATCTCGTCACGACGGCTGAAGGACTTCAAGGTGCAGTGCAAGATCAAAG
AACCGCATCAGCAGCTGCAATGTATTCTGCAGTTGATGAGTCATCACTGCGAGTTCTCGTCCCATCAAAGGATAAGATGAAAGAGTGCTTTGAACCGTTT
AATTTGAACATCGTGCAAGTTGAGCATGTGACACCAACCGTATCGTCAATCGGACCAGAGTTCCACGTAAATGACTACTATGACACAGATGCTGCACCGA
GCATCGAGCACCAGTTCATTCCAAGCATCACGGTAAACGAAAAGCAGCAGGTGCCGGAGGGCCCGGATTCGAAGGACCTTTCGGGTTTAAAGAAAGGGTG
CGATAGAGAAATGTGTGTGTCATTGCAGTTGTACGAGCCTGAGGGAAAGAGAAGAAGAACGCAGTCTGGATCATCTCCCAACAATAAAGATTCCAAATGA
AA sequence
>Lus10017140 pacid=23167415 polypeptide=Lus10017140 locus=Lus10017140.g ID=Lus10017140.BGIv1.0 annot-version=v1.0
MNRNRLDLRTHHSRSTTQSEESALDMERNCCNHSNLPWSSPASLQPGGQQHSESIAAYFSWPTVNRLNDSAEDRANYFGNLQKGLLPEILGRLPSGQQST
TLLELMAIRAFHSKILRRVSLGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLNHVQCLPSALERPGGVWCDVDVVEFSYFGAPAPTPTEQLYTELVDGL
RGGDPSVGSGSQVANQETYGTLGAIVKSRAENRQVGFLTDRHVAVDLEQPNQKMFHPLPPSRGPGVYLGAVERATSFISDELWYGTFAGMNPETFVRADG
AFIPFAEDFNMNNVTTLVRGVGEIGDVHAIDMQSPINGLIIRQVVKVGRSSGLTTGTIMAHALEYNDDKGICFFTDFLVVGENHQPFDLEGDSGSLILLT
GSGCDKKLQPVGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLDLLELDLVTTAEGLQGAVQDQRTASAAAMYSAVDESSLRVLVPSKDKMKECFEPF
NLNIVQVEHVTPTVSSIGPEFHVNDYYDTDAAPSIEHQFIPSITVNEKQQVPEGPDSKDLSGLKKGCDREMCVSLQLYEPEGKRRRTQSGSSPNNKDSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G45030 Trypsin family protein (.1.2) Lus10017140
[exp]
0 1
AT4G31540 ATEXO70G1 exocyst subunit exo70 family p... Lus10014917
[exp]
1.0 0.7965
AT2G45910 U-box domain-containing protei... Lus10036359
[exp]
17.4 0.7522
AT5G41210 GSTU12, GST10, ... glutathione S-transferase THET... Lus10008308
[exp]
26.2 0.7053
AT3G22142 Bifunctional inhibitor/lipid-t... Lus10033214
[exp]
26.9 0.7218
AT5G66930 unknown protein Lus10000838
[exp]
31.6 0.7263
AT1G10380 Putative membrane lipoprotein ... Lus10037078
[exp]
32.6 0.7302
AT2G03810 18S pre-ribosomal assembly pro... Lus10019193
[exp]
34.9 0.7386
AT1G31500 DNAse I-like superfamily prote... Lus10042463
[exp]
36.3 0.7431
AT4G37710 VQ motif-containing protein (.... Lus10019270
[exp]
53.4 0.7039
AT3G62190 Chaperone DnaJ-domain superfam... Lus10009981
[exp]
71.7 0.7160

Lus10017140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.