Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19980 437 / 2e-154 GONST4 golgi nucleotide sugar transporter 4 (.1) AT1G76340 309 / 9e-104 GONST3 golgi nucleotide sugar transporter 3 (.1) AT4G31600 58 / 2e-09 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT4G32272 48 / 6e-06 Nucleotide/sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018311 [exp] 591 / 0 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 531 / 0 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 528 / 0 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10034672 [exp] 297 / 4e-99 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10037000 [exp] 296 / 1e-98 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 287 / 1e-95 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 234 / 3e-75 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10020119 [exp] 54 / 8e-08 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 51 / 5e-07 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071700 [exp] 477 / 3e-170 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.010G057600 [exp] 300 / 4e-100 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 291 / 7e-97 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.006G270700 [exp] 56 / 1e-08 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 53 / 1e-07 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10017141 pacid=23167453 polypeptide=Lus10017141 locus=Lus10017141.g ID=Lus10017141.BGIv1.0 annot-version=v1.0 ATGTCTGCGATTCGAGCTGAACCTACGAAGCAACTGGCGACGAGCAGCGTGGTGTTGGGTTACGCTCTCTGCTCAAGCCTCCTCGCGGTAATCAACAAGT ACGCCATTACTAAATTCAACTACCCTGGTCTCCTCACAGCCCTCCAGTACTTCACATCCGCAGTCGGAGTATGGGTTCTCGGGAAATTAGGGTTCTTGAC TCACGACGCCTTCAATTTAGAAACAGCCAAGAAATTCCTCCCCGCTGCATTCGTTTTCTACCTCGCAATCTTCACCAACACCAATCTCTTGCGCCACGCC AACGTGGACACCTTCATCGTGTTCAGATCCCTAACCCCACTCCTCGTCGCCATAGCAGACACCATTTTCAGGAAACAACCCGTTCCAACTAAACTGACTT TCTTCGCCTTGATTGTCATTTTGGGTGGTGCTTTGGGTTACGTAGCTACTGATTCTGCTTTCACACTCACTGCATATTCATGGGCGTTGGCTTATTTGGT CACCATCACAACCGAGATGGTGTACATTAAGCACATTGTGTCTAGCATTGGATTGAACACTTGGGGTTTGGTGCTTTACAACAATCTTCTCTCTTTGCTC ATATCTCCTGTGTTTTGGGTTCTCACTGGGGAATATAGAGAGGTCTTTGATGCTGCTCTTGGTGATGATAGGGATTGGTTCAGAATTGATGCCTTTGGTG GTGTGGCATTGTCTTGTGTGTTTGGTGTTCTCATTAGCTTCTTCGGATTTGCGGCCAGGAAGGCGATATCTGCCACTGCTTTCACTGTGACTGGCGTGGT TAACAAGTTTCTTACTGTTGTCATCAATGTGATGATATGGGATAAGCATGCCAGTCCGTTTGGATTGCTTTGCCTTCTCTTCACGCTGTGTGGAGGTGTT CTTTATCAGCAGTCTGTTACTGTTACTAATCCTGTTTCTAGAGAGAAAGACAATGCGGAAGAGGATGCTGAAAATGTTGTGCTTGTAGACCAAAAAGAGG GTGGCGATGAAGATACAAGTAAGTAG
AA sequence Show only first row Show all	>Lus10017141 pacid=23167453 polypeptide=Lus10017141 locus=Lus10017141.g ID=Lus10017141.BGIv1.0 annot-version=v1.0 MSAIRAEPTKQLATSSVVLGYALCSSLLAVINKYAITKFNYPGLLTALQYFTSAVGVWVLGKLGFLTHDAFNLETAKKFLPAAFVFYLAIFTNTNLLRHA NVDTFIVFRSLTPLLVAIADTIFRKQPVPTKLTFFALIVILGGALGYVATDSAFTLTAYSWALAYLVTITTEMVYIKHIVSSIGLNTWGLVLYNNLLSLL ISPVFWVLTGEYREVFDAALGDDRDWFRIDAFGGVALSCVFGVLISFFGFAARKAISATAFTVTGVVNKFLTVVINVMIWDKHASPFGLLCLLFTLCGGV LYQQSVTVTNPVSREKDNAEEDAENVVLVDQKEGGDEDTSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	0	1
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	1.4	0.8857
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10000804 [exp]	2.6	0.8527
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	2.8	0.8623
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10032450 [exp]	3.5	0.8679
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	4.9	0.8337
AT2G41410			Calcium-binding EF-hand family...		Lus10038970 [exp]	5.2	0.8637
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	5.9	0.8589
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	6.5	0.8589
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	6.7	0.8415
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	8.0	0.8416

Compare expression of checked genes

Lus10017141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.