Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19860 748 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G03310 420 / 4e-143 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) AT1G27480 57 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1) AT3G44830 49 / 8e-06 Lecithin:cholesterol acyltransferase family protein (.1) AT5G13640 49 / 9e-06 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G03370 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018310 [exp] 1105 / 0 AT4G19860 749 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026853 [exp] 429 / 2e-146 AT3G03310 574 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Lus10020225 [exp] 353 / 5e-114 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1) Lus10018308 [exp] 130 / 1e-31 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10018664 [exp] 64 / 1e-10 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10007728 [exp] 63 / 3e-10 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10019519 [exp] 52 / 8e-07 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10017165 [exp] 49 / 1e-05 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 47 / 5e-05 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121000 [exp] 860 / 0 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 840 / 0 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 439 / 1e-150 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.014G014400 [exp] 61 / 1e-09 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G171000 [exp] 50 / 4e-06 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 49 / 9e-06 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017142 pacid=23167437 polypeptide=Lus10017142 locus=Lus10017142.g ID=Lus10017142.BGIv1.0 annot-version=v1.0 ATGTCGGTGTTGCTAGAGGACATAGTAAAGTCCGTGGAGCTCTGGCTGAAATTCTTGAAGAAAGAACCCCAATCCTATGTGGATCCGACTCTGGATCCGG TACTGTTGGTGCCGGGAGTAGCTGGCAGTATTCTTAATGCAGTGGATAAGGACGACAGCGGAAAGGTGGAGAGAGTTTGGGTTCGGATTTTTGCTGCTGA TCGTGAGCTGTGTGCCAAGCTCTGGTCTCGCTACGATCCTTCTACTGGCGCAACTGTGTCTCTAAATCAAAACATCGAAATTGTGGTTCCTGAAGAGAGA GCTGGATTGTATGCAATTGACGTTTTGGATCCTGACCTGATCATCGGACGTGAGTGTGTCTATTATTTTCATGACATGATCACTGAGATGCTGAAATGGG GCTTTCAAGAAGGAAAGACGTTGTTTGGTTTTGGGTATGATTTCCGACAAAGCAACAGGTTACCAGAGACAATGGATCGTTTTGCTAAGAAGTTAGAGTC TGCGTACAATGCCTCAGGAGGGAAGAAGATAAACGTTATAAGTCATTCCATGGGGGGTCTTTTAGTTAAATGTTTCATGTCCCTGCACAGTGATGTGTTT GAGAAGTATGTGAAGAATTGGATTGCAATTGCTGCTCCGTTCCAAGGTGCACCTGGGTATGTCATGTCAACTTTTCTAAATGGAATGTCGTTTGTTGAAG GCTGGCAGCAGAACTTTTTCATATCAAAATGGAGCATGCATCAGATGCTTATTGAATGTCCATCTGTATACGAATTGATGGCCCACCCAAATTTTGATTG GCAACACATTCCTCTTCTCGAGTTCTGGAGGAAAAAACAAGATAGTAATGGAACTTCCCAGATAATGCTTGAGAAATACCACACTAACGAGACTGTTCAA GTTTATAAAAAGGCTCTTTCAAGTAACAAGATTAGTTACGACGGAGCTGATTTGCCATTGCCTTTCAACTCGGACATTATGGATTGGGCTGAAGAAACCT TCAAAATCCTGTCACGAGCAAAGGTTCCACCTAATGTCAAGTTCTACAATATATACGGGACCAGTCTGGCCACGCCTCATACCGTTTGCTATGGAGATGA AAAGACACCTGTCAGTGATCTAGAAGAACTGCGATTCTACCAGCCAAAATATGTATGCGTAGATGGAGATGGAACAGTTCCAGCAGAGTCGGCTAAGGCG GATGGTCTGACCGCAGAAGCGAGGGTAGCAATACCCGGTGAGCACAGAGGCATTCTTTGTGAGCACCATTTGTTCAGGGTTGTCAGGCACTGGATAAAGG CAGGTGCTCCGGATCCTTTCTACAACCCGATCAACGACTATGTTATCCTTCCCACTGCATTCGAAATCGAAACCCACAAGGAGAAGGGTCTGCAGTTCAC TACTCTAAAGGAGGGATGGGAGATCGTCTCGGGAGATCAAGACGAGCATGACGGAATGGACGGCTCGAAGCCCGTGGTGAGTTCAATGACTGTTTCTCGA CCAGGCAACGATTGTAACTCTGCAGCCGAAGCTTGTGCAACCCTGGTCCTTCACCCGCAGAACAAGGGCAAGCAACATGTGGAGCTCAATGCATTAAGTG TCTCTGTTGATGCTTAG
AA sequence Show only first row Show all	>Lus10017142 pacid=23167437 polypeptide=Lus10017142 locus=Lus10017142.g ID=Lus10017142.BGIv1.0 annot-version=v1.0 MSVLLEDIVKSVELWLKFLKKEPQSYVDPTLDPVLLVPGVAGSILNAVDKDDSGKVERVWVRIFAADRELCAKLWSRYDPSTGATVSLNQNIEIVVPEER AGLYAIDVLDPDLIIGRECVYYFHDMITEMLKWGFQEGKTLFGFGYDFRQSNRLPETMDRFAKKLESAYNASGGKKINVISHSMGGLLVKCFMSLHSDVF EKYVKNWIAIAAPFQGAPGYVMSTFLNGMSFVEGWQQNFFISKWSMHQMLIECPSVYELMAHPNFDWQHIPLLEFWRKKQDSNGTSQIMLEKYHTNETVQ VYKKALSSNKISYDGADLPLPFNSDIMDWAEETFKILSRAKVPPNVKFYNIYGTSLATPHTVCYGDEKTPVSDLEELRFYQPKYVCVDGDGTVPAESAKA DGLTAEARVAIPGEHRGILCEHHLFRVVRHWIKAGAPDPFYNPINDYVILPTAFEIETHKEKGLQFTTLKEGWEIVSGDQDEHDGMDGSKPVVSSMTVSR PGNDCNSAAEACATLVLHPQNKGKQHVELNALSVSVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	0	1
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	2.4	0.9197
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	3.5	0.9315
AT2G31090			unknown protein		Lus10017667 [exp]	3.7	0.9383
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	5.5	0.9222
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	6.2	0.9088
AT4G30780			unknown protein		Lus10036602 [exp]	8.2	0.8982
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	14.1	0.9327
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	16.7	0.8944
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	16.9	0.9185
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	17.0	0.9095

Compare expression of checked genes

Lus10017142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.