Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35390 553 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 403 / 6e-131 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT4G31250 333 / 7e-104 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 329 / 2e-102 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 304 / 6e-93 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 277 / 6e-83 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 270 / 1e-80 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 249 / 2e-72 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 233 / 5e-67 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 225 / 7e-64 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027597 [exp] 788 / 0 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 762 / 0 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021595 [exp] 417 / 4e-141 AT5G35390 248 / 4e-77 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 359 / 4e-114 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 347 / 2e-109 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 343 / 1e-107 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 317 / 6e-100 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 313 / 2e-96 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 300 / 2e-95 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G147300 [exp] 672 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 548 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 503 / 6e-170 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 369 / 7e-117 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 365 / 3e-116 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 358 / 5e-114 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 354 / 3e-112 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 342 / 2e-107 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 310 / 1e-98 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 304 / 7e-93 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017144 pacid=23167394 polypeptide=Lus10017144 locus=Lus10017144.g ID=Lus10017144.BGIv1.0 annot-version=v1.0 ATGATAGTAAAGGGCAAACATGCTATCTCGTTTTTGCGTGTTTCGCCCTTTAGCAACAACGATCGAGAACGAGATATTATGACTCGTCTCCATAGTGGTA ATTATAACACAAACATCACCATGCACACTGTTAGAAAACCCTTGTTCTTCCTCTTCATCATATCCCTCCACTTTGTTGGCTGTTGGGGCCTTACAGACTC TGAGGTTCTCCTTGACTTCAAGGCCTCCTTAGATAATATCAACGTGCTTCCCGATTGGAATGATGGCGTTGATGTCTGCGAAGGGGACAAAGCCAATTGG GCTGGTGTTTTTTGTGACGGGGGCTTGGTTTTAGGGCTACAACTAGAGTCAATGGGGCTAACAGGAAGGATAGATGTTAATAGCTTAGCGAAGCTTGAGG AGTTGAAAACATTGAGCCTGATGAACAACGAGTTCGAAGGAGCATTGCCGGATTTCAAGAACTTACTGGAATTGAGGTCATTGTATTTGTCGAACAACAA GTTCTCTGGGGAAATTCCGAGAGATTCCTTTAACGGAATGCTTAAGTTGAAGAAATTATACCTATCTGGAAATGAACTTACAGGAGAAATCCCTTCTTCA TTATCAGGATTGTCTAAGCTCACCACTTTGAGGCTTGAAGATAATGGATTTACAGGGTTATTACCAAACTTTACCGCTAAGTTTGAGTCTTTCAATGCAT CCAATAATGGATTGGAAGGTCCCATTCCTGCTAGCCTTTCTAACATTGATCCAAGTGCATTTTCTGGAAATAAAGGATTGTGTGGAAAACCATTAGCGGG TTGCACTGGAATTAATGCCCCAACACCATCCCCCGCATCCAACTCAAACTCCAAATCAAGCCGCCTCCAAACTACAAATGACACAGTCACCATTCCAAAG GATCTAGAGGACCCAACCGATCCAGCTGCCACGATGCCATCAGGCACCAAGAAGCCATCAACAGCAAGCATAGTGTTTGTTGCAATCGTTGGTGCGGTTG CCGTGTGCGGAATCATAGCAGCCGCGTTCATTTTAATGCGGCGTCGCCAGCAAACTGTAGAGACGATAGAATCAGCGAATGCGCTTGGCATACAAGATGA TCCTAGCCATCGGCCCACATCTCGAGAACCATCTAGAGTAATAGTTGCAGGTGGGGAGGCGACAATGAAACTATCTTTCGTGAGAGAGGATAGGGGAAAG TTTGAGCTGCATGACCTGTTGAAAGCATCAGCAGAATTACTTGGGAGTGGGTGTTTTGGGTCATCATATAAGGCGGCACTGACTTCAGGGCAAGTAATGG TGGTGAAGAGGTTCAAGCAGATGAATAATGTGGGGAGAGAAGAGTTTCATGACCACATGAGAAGGTTAGGGAAGTTGAGACACACCAACTTGTTGCCTTT GGTGGCTTACTATTATCGCAAGGAAGAGAAGCTTTTGGTTCATGATTTTGTTCCTTATGGCAGCTTGGCTGTCCATCTCCATGGGCATCAAGCACTAGGA CAGCCAAGCTTAGAGTGGGAGAACCGAGTTAGAATCATAAAGGGAGTAGCGAGAGGACTACTCTACCTGTCTAAGGAACTCCCAAGCATAATTGCAGCAC ACGGGCACTTAAAATCAAACAATGTCCTCCTAGACGAGAATTTTGAACCCTATCTCACAGATTATGGTCTGATTCCAGTAATCAATCAAGAGAGCGCCCA AGAGCTCATGGTTGCATACAAATCCCCCGAATACCTCCGTTATGGCCGCATAACAAAAAAGACAGATGTATGGGCCTTAGGGATGCTCATCCTTGAGGTT GTAACAGGAAAATTGTCATCCACATTCCTCAAACAAGGAGGGAGCAAGGCGAGCAATAGTAATAATGAAAGTAGTCGAGGAGGAGGAGGAGGGGATGATG AGGATGATCTAGTGAGTTGGGTGAGGTTGATACCTGAGGAGCGATGGATACGTGAGGTTATTGACAGGGAATTACAGGAAGAGGTAGTTAACAGCCAAAC ACAGGAAGGGGATCATGAGATGGTAAAGTTGGTTAGGATAGGACTGAGTTGTTGTGAAGGCGATGTCGAGAAGAGGCCTGACTTGAAACAAGCGGTAGAG AGGATTGAGGAGATGCAGATTGTCAATGAAAATAAAGAGAGTTATGCTGATGATGATTTCTACTCTTTTTACAGTGAAGGAGGTGTTGGGAGGTCATCCA CACACTTGTCGCTGAGTTCGACAATCCCTCAACATGATTCTAATTAA
AA sequence Show only first row Show all	>Lus10017144 pacid=23167394 polypeptide=Lus10017144 locus=Lus10017144.g ID=Lus10017144.BGIv1.0 annot-version=v1.0 MIVKGKHAISFLRVSPFSNNDRERDIMTRLHSGNYNTNITMHTVRKPLFFLFIISLHFVGCWGLTDSEVLLDFKASLDNINVLPDWNDGVDVCEGDKANW AGVFCDGGLVLGLQLESMGLTGRIDVNSLAKLEELKTLSLMNNEFEGALPDFKNLLELRSLYLSNNKFSGEIPRDSFNGMLKLKKLYLSGNELTGEIPSS LSGLSKLTTLRLEDNGFTGLLPNFTAKFESFNASNNGLEGPIPASLSNIDPSAFSGNKGLCGKPLAGCTGINAPTPSPASNSNSKSSRLQTTNDTVTIPK DLEDPTDPAATMPSGTKKPSTASIVFVAIVGAVAVCGIIAAAFILMRRRQQTVETIESANALGIQDDPSHRPTSREPSRVIVAGGEATMKLSFVREDRGK FELHDLLKASAELLGSGCFGSSYKAALTSGQVMVVKRFKQMNNVGREEFHDHMRRLGKLRHTNLLPLVAYYYRKEEKLLVHDFVPYGSLAVHLHGHQALG QPSLEWENRVRIIKGVARGLLYLSKELPSIIAAHGHLKSNNVLLDENFEPYLTDYGLIPVINQESAQELMVAYKSPEYLRYGRITKKTDVWALGMLILEV VTGKLSSTFLKQGGSKASNSNNESSRGGGGGDDEDDLVSWVRLIPEERWIREVIDRELQEEVVNSQTQEGDHEMVKLVRIGLSCCEGDVEKRPDLKQAVE RIEEMQIVNENKESYADDDFYSFYSEGGVGRSSTHLSLSSTIPQHDSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	0	1
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	6.0	0.7267
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10005117 [exp]	6.3	0.7287
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	6.6	0.7907
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	7.0	0.7174
					Lus10003693 [exp]	7.1	0.7278
AT5G59790			Domain of unknown function (DU...		Lus10030328 [exp]	7.7	0.6537
AT1G11340			S-locus lectin protein kinase ...		Lus10017247 [exp]	9.2	0.6624
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10008666 [exp]	9.8	0.5760
AT5G10530			Concanavalin A-like lectin pro...		Lus10042310 [exp]	10.7	0.7305
AT2G36430			Plant protein of unknown funct...		Lus10035569 [exp]	12.0	0.6388

Compare expression of checked genes

Lus10017144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.