Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35330 282 / 8e-95 MBD2, MBD02, ATMBD2 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) AT5G35338 145 / 4e-43 MBD12 methyl-CPG-binding domain 12 (.2) AT4G22745 122 / 3e-33 MBD1 methyl-CPG-binding domain 1 (.1) AT3G63030 116 / 2e-31 MBD4 methyl-CPG-binding domain 4 (.1) AT4G00416 72 / 3e-15 MBD3 methyl-CPG-binding domain 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021593 [exp] 615 / 0 AT5G35330 283 / 1e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Lus10042674 [exp] 119 / 9e-33 AT3G63030 207 / 4e-69 methyl-CPG-binding domain 4 (.1) Lus10029631 [exp] 119 / 1e-32 AT3G63030 208 / 1e-69 methyl-CPG-binding domain 4 (.1) Lus10027980 [exp] 110 / 1e-28 AT3G63030 206 / 4e-68 methyl-CPG-binding domain 4 (.1) Lus10008176 [exp] 108 / 4e-28 AT3G63030 204 / 3e-67 methyl-CPG-binding domain 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146700 [exp] 325 / 9e-111 AT5G35330 286 / 6e-96 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.006G077600 [exp] 320 / 1e-108 AT5G35330 257 / 6e-85 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G145500 [exp] 320 / 2e-108 AT5G35330 282 / 2e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.002G212600 [exp] 128 / 7e-36 AT3G63030 221 / 3e-74 methyl-CPG-binding domain 4 (.1) Potri.014G137100 [exp] 124 / 3e-34 AT3G63030 223 / 4e-75 methyl-CPG-binding domain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10017146 pacid=23167400 polypeptide=Lus10017146 locus=Lus10017146.g ID=Lus10017146.BGIv1.0 annot-version=v1.0 ATGGAGTCACATACTGAAGAAGCTGTCCCTAATGTGAATTCAGAGGCAGATGTGGAGACCAGTCCAAGTTTCAAGGATTATGTTCATAAAGCTATTCAAA AAATTATCGATGTCTCTTCTTCCTCAGAAGAGGATGAGACCAACGAGCTGGAGGATGTAGATGGGCACTCTCAGGAAAACAGCAACAATCAGTTAGTTCT TTATCATCCACGTGGTAACAGTAACAGCGAGATTGAGCCGAATCCTGAACCTATTCAGTGCAGAAATCCGACAGTTATGAGGTTCACCCCTCGAGCTATG GCTAGAGTTTTGCCATCTGTAGGAGCTTTCACAGTTCAGTGTGCCAACTGTTTTAAGTGGAGACTCATCCCAACACAAGAGAAGTATGAAGAAATTCGTG AACATATATTGGAAAGACCATTCTATTGTGAGACAGTTCAAGAATGGCGGCCTAATGTTTCATGTAATGATCCAGAAGACATTTCTCAAGATGGTAGCAG GCTATGGGCGATTGATAAACCTAATATCGCCCAGCCACCTCGGGGATGGCAACGTTTACTACACATCAGGGGGGAAGGCTGTAGCAAGTTTGCCGATGTG TACTATGCATCCCCATCTGGGAAGAAACTTCGCTCGATTGTCGAGATACAAAAGTACTTGGCAGATCACCCAGAATATGCAGAAGGTTTATCTTTGTCTC AATTTTCATTCCAAACTCCAAAACCTTTGCAAGAAAACTATGTCAGGAAGCGTCCTCCTCGTATAACAGGTCAAGCTGATAACAACCCTCTTTTGCAACC AAAGGAAGTAACTCCTCTCTCAATCGTGGGGCCAGACAATATAAACCTTGAGCTTGGTACGCCTTCGTCGCTTTCTGCTCAGGAACCTGCTTCTGAAGAT GTGGGTCAACCAGCTAAGAAGCAAAGAACTGAATGGAAAGATATGTTCTGTGATGAAAGTCCAGCTTATAAGCAACAGCAAGCATGA
AA sequence Show only first row Show all	>Lus10017146 pacid=23167400 polypeptide=Lus10017146 locus=Lus10017146.g ID=Lus10017146.BGIv1.0 annot-version=v1.0 MESHTEEAVPNVNSEADVETSPSFKDYVHKAIQKIIDVSSSSEEDETNELEDVDGHSQENSNNQLVLYHPRGNSNSEIEPNPEPIQCRNPTVMRFTPRAM ARVLPSVGAFTVQCANCFKWRLIPTQEKYEEIREHILERPFYCETVQEWRPNVSCNDPEDISQDGSRLWAIDKPNIAQPPRGWQRLLHIRGEGCSKFADV YYASPSGKKLRSIVEIQKYLADHPEYAEGLSLSQFSFQTPKPLQENYVRKRPPRITGQADNNPLLQPKEVTPLSIVGPDNINLELGTPSSLSAQEPASED VGQPAKKQRTEWKDMFCDESPAYKQQQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10017146 [exp]	0	1

Compare expression of checked genes

Lus10017146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.