Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20500 179 / 3e-59 Glutaredoxin family protein (.1) AT1G77370 130 / 7e-40 Glutaredoxin family protein (.1) AT5G63030 97 / 6e-27 GRXC1 glutaredoxin C1, Thioredoxin superfamily protein (.1) AT5G40370 94 / 1e-25 GRXC2 glutaredoxin C2, Glutaredoxin family protein (.1.2) AT4G28730 89 / 3e-23 GrxC5 glutaredoxin C5, Glutaredoxin family protein (.1) AT2G20270 89 / 6e-23 Thioredoxin superfamily protein (.1.2) AT4G15700 67 / 3e-15 Thioredoxin superfamily protein (.1) AT3G21460 66 / 7e-15 Glutaredoxin family protein (.1) AT4G15690 66 / 1e-14 Thioredoxin superfamily protein (.1) AT4G15680 65 / 1e-14 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021590 [exp] 243 / 2e-84 AT5G20500 180 / 1e-59 Glutaredoxin family protein (.1) Lus10028355 [exp] 129 / 2e-39 AT1G77370 171 / 2e-56 Glutaredoxin family protein (.1) Lus10022253 [exp] 107 / 4e-31 AT5G40370 162 / 2e-53 glutaredoxin C2, Glutaredoxin family protein (.1.2) Lus10013089 [exp] 107 / 8e-31 AT5G40370 162 / 2e-53 glutaredoxin C2, Glutaredoxin family protein (.1.2) Lus10042104 [exp] 94 / 2e-25 AT5G63030 177 / 1e-58 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10001237 [exp] 93 / 3e-25 AT5G63030 171 / 2e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10022844 [exp] 89 / 9e-23 AT4G28730 177 / 3e-57 glutaredoxin C5, Glutaredoxin family protein (.1) Lus10011915 [exp] 70 / 1e-15 AT4G28730 154 / 4e-48 glutaredoxin C5, Glutaredoxin family protein (.1) Lus10012815 [exp] 66 / 1e-14 AT3G21460 171 / 3e-57 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133400 [exp] 188 / 1e-62 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1) Potri.007G017300 [exp] 131 / 3e-40 AT1G77370 163 / 8e-53 Glutaredoxin family protein (.1) Potri.012G082800 [exp] 98 / 3e-27 AT5G63030 155 / 6e-50 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.002G254100 [exp] 96 / 9e-26 AT4G28730 176 / 2e-56 glutaredoxin C5, Glutaredoxin family protein (.1) Potri.015G078900 [exp] 93 / 5e-25 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.001G347700 [exp] 89 / 6e-24 AT5G40370 158 / 1e-51 glutaredoxin C2, Glutaredoxin family protein (.1.2) Potri.002G208500 [exp] 67 / 2e-15 AT3G62950 171 / 5e-57 Thioredoxin superfamily protein (.1) Potri.014G134200 [exp] 67 / 2e-15 AT3G62950 169 / 4e-56 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 65 / 2e-14 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.001G325800 [exp] 64 / 7e-14 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10017148 pacid=23167430 polypeptide=Lus10017148 locus=Lus10017148.g ID=Lus10017148.BGIv1.0 annot-version=v1.0 ATGGCCAAAGTTTCGTCGATATTCGCAGTTATTGCAACTCTGGCAGCTATAGCTGCGGTATCCTTTAGCTTGCCATCGGTATCTGCCGCTTCTCCAGAGA CTGCTTTTGTCAAAAAGACCATCTCCTCTCACCAGATTGTTATATTTTCCAAGTCCTATTGCCCATACTGTAGGAGGGCTAAAGCTGTTTTCAAAGAGTT GAACCAAACACCATATGTGGTTGAGCTTGATGAGAGAGAGGATGGGCATGACATCCAGGGTGCACTGGGTCAACTAATAGGGAAACGTACTGTACCTCAG GTTTTCATAAAGGGTAAACACATTGGTGGCTCTGACGATACTGTTGAAGCATATGAGAATGGTGAACTGGCAACCCTTCTAGGGATTGACGTCGACGACG AAAAGGATGATCTGTGA
AA sequence Show only first row Show all	>Lus10017148 pacid=23167430 polypeptide=Lus10017148 locus=Lus10017148.g ID=Lus10017148.BGIv1.0 annot-version=v1.0 MAKVSSIFAVIATLAAIAAVSFSLPSVSAASPETAFVKKTISSHQIVIFSKSYCPYCRRAKAVFKELNQTPYVVELDEREDGHDIQGALGQLIGKRTVPQ VFIKGKHIGGSDDTVEAYENGELATLLGIDVDDEKDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	0	1
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	1.0	0.9527
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10015867 [exp]	1.4	0.9413
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10040374 [exp]	1.7	0.9406
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	4.0	0.9289
AT5G17250			Alkaline-phosphatase-like fami...		Lus10006806 [exp]	4.5	0.9165
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10003170 [exp]	5.7	0.9198
AT5G16950			unknown protein		Lus10021093 [exp]	6.0	0.9173
AT4G26210			Mitochondrial ATP synthase sub...		Lus10007995 [exp]	6.2	0.9170
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	7.0	0.9226
AT5G18800			Cox19-like CHCH family protein...		Lus10033991 [exp]	7.2	0.9185

Compare expression of checked genes

Lus10017148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.