Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39930 295 / 5e-96 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT4G09020 102 / 2e-25 ATISA3, ISA3 isoamylase 3 (.1) AT1G03310 48 / 1e-06 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021586 [exp] 382 / 3e-129 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10036474 [exp] 102 / 3e-25 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10027999 [exp] 49 / 1e-06 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10000661 [exp] 48 / 2e-06 AT1G03310 848 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070800 [exp] 324 / 1e-106 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 316 / 7e-104 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 102 / 4e-25 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.002G219900 [exp] 53 / 3e-08 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017149 pacid=23167496 polypeptide=Lus10017149 locus=Lus10017149.g ID=Lus10017149.BGIv1.0 annot-version=v1.0 ATGGGCGCATTCTTGATGTTTTGTCTTGACCAGGGTGTTCCAATGATATACATGGGTGACGAATACGGGCACACAAAGGGAGGAAACAACAACACCTATT GTCTTGATAACTATATAAACTATTTCCGATGGGACAAGAAGGATGAGTCGTCGGCAGACTTCTTCAGGTTTTGCCGCCTCATGACCAATTTCCGCCAAGA ATGCGAATCTTTAGGTTTAAATGATTTTCCAACGGCGGAGAGGCTACAATGGCACGGTCTTGTTGCCGGAGTGCCAGACTGGTCTGAAACAAGCCGATTT GTGGCCTTTACCCTGGTTGACTCGGTGAAAGGAGAGATGTACATTGGGTTCAATACTAGTCACGTTCCTGTAACGATTTCACTTCCAGAACGTCCAGGAT ACAGATGGGAGCCATTGGTGGACACGGGGAAGGCTGCTCCTTTCGACTTTCTTGTGGATGATGTCCCTGGAAAAAAAGTTGCAATTGCACAGCTTTCACA CTTTCTGGATGCAAACTTATACCCAATGCTCAGTTACTCATCCATCATTCTCATTCTTACACCAGATGACACCAATGGCATCTGA
AA sequence Show only first row Show all	>Lus10017149 pacid=23167496 polypeptide=Lus10017149 locus=Lus10017149.g ID=Lus10017149.BGIv1.0 annot-version=v1.0 MGAFLMFCLDQGVPMIYMGDEYGHTKGGNNNTYCLDNYINYFRWDKKDESSADFFRFCRLMTNFRQECESLGLNDFPTAERLQWHGLVAGVPDWSETSRF VAFTLVDSVKGEMYIGFNTSHVPVTISLPERPGYRWEPLVDTGKAAPFDFLVDDVPGKKVAIAQLSHFLDANLYPMLSYSSIILILTPDDTNGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	0	1
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	2.2	0.9045
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	2.4	0.8851
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	6.9	0.8279
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	8.1	0.8642
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	8.5	0.8892
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	12.2	0.8833
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10001807 [exp]	12.4	0.8145
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	12.8	0.8588
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	17.1	0.8521
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	17.3	0.8534

Compare expression of checked genes

Lus10017149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.